Index

A B C D E F G H I J K L M N O P Q R S T U V W X

A

ABSTRACT_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
AbstractAuthentication - Class in net.cnri.dobj: Provides a partial implementation of the DOAuthentication interface that helps Interface for objects that can be used to authenticate themselves to the other side of a DOConnection link.
AbstractAuthentication() - Constructor for class net.cnri.dobj.AbstractAuthentication
AbstractCloseableIterator<T> - Class in net.cnri.repository.util: Skeletal implementation of CloseableIterator.
AbstractCloseableIterator() - Constructor for class net.cnri.repository.util.AbstractCloseableIterator
AbstractDataElement - Class in net.cnri.repository
AbstractDataElement() - Constructor for class net.cnri.repository.AbstractDataElement
AbstractDelegationOperations - Class in net.cnri.apps.doserver.operators
AbstractDelegationOperations() - Constructor for class net.cnri.apps.doserver.operators.AbstractDelegationOperations
AbstractDigitalObject - Class in net.cnri.repository
AbstractDigitalObject() - Constructor for class net.cnri.repository.AbstractDigitalObject
AbstractDirectRepository - Class in net.cnri.repository
AbstractDirectRepository() - Constructor for class net.cnri.repository.AbstractDirectRepository
AbstractFileDataElement - Class in net.cnri.repository
AbstractFileDataElement() - Constructor for class net.cnri.repository.AbstractFileDataElement
AbstractQueryVisitorForSearch<T> - Class in net.cnri.repository.search: An effectively abstract implementation of QueryVisitor used by repository search implementations.
AbstractQueryVisitorForSearch(Repository, Class<T>) - Constructor for class net.cnri.repository.search.AbstractQueryVisitorForSearch
AbstractQueryVisitorForSearch.SearchHandles - Class in net.cnri.repository.search: Use new AbstractQueryVisitorForSearch.SearchHandles(repo) as shorthand for new AbstractQueryVisitorForSearch<String>(repo,String.class).
AbstractQueryVisitorForSearch.SearchHandles(Repository) - Constructor for class net.cnri.repository.search.AbstractQueryVisitorForSearch.SearchHandles
AbstractQueryVisitorForSearch.SearchObjects - Class in net.cnri.repository.search: Use new AbstractQueryVisitorForSearch.SearchObjects(repo) as shorthand for new AbstractQueryVisitorForSearch<DigitalObject>(repo,DigitalObject.class).
AbstractQueryVisitorForSearch.SearchObjects(Repository) - Constructor for class net.cnri.repository.search.AbstractQueryVisitorForSearch.SearchObjects
AbstractRepository - Class in net.cnri.repository
AbstractRepository() - Constructor for class net.cnri.repository.AbstractRepository
AbstractStorage - Class in net.cnri.apps.doserver: This abstract class implements the enhanced logging functions for Storage (without enhancements!) in order to ease making old implementations compatible.
AbstractStorage() - Constructor for class net.cnri.apps.doserver.AbstractStorage
AbstractTransactionQueue - Class in net.cnri.apps.doserver.txnlog: Class responsible for keeping track of the transaction queue.
AbstractTransactionQueue() - Constructor for class net.cnri.apps.doserver.txnlog.AbstractTransactionQueue
AbstractTransactionQueue.CloseableEnumeration - Interface in net.cnri.apps.doserver.txnlog
accept(QueryVisitor<T>) - Method in class net.cnri.repository.search.AttributeQuery
accept(QueryVisitor<T>) - Method in class net.cnri.repository.search.BooleanQuery
accept(QueryVisitor<T>) - Method in class net.cnri.repository.search.ElementAttributeQuery
accept(QueryVisitor<T>) - Method in class net.cnri.repository.search.MatchAllObjectsQuery
accept(QueryVisitor<T>) - Method in interface net.cnri.repository.search.Query: Returns the result of applying a QueryVisitor to this query.
accept(QueryVisitor<T>) - Method in class net.cnri.repository.search.RawQuery
action - Variable in class net.cnri.apps.doserver.txnlog.Transaction
ACTION_COMMENT - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
ACTION_LOGGED_ACTION - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
ACTION_OBJ_ADD - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
ACTION_OBJ_ATTRIBUTE_DELETE - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
ACTION_OBJ_ATTRIBUTE_UPDATE - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
ACTION_OBJ_DATA_DELETE - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
ACTION_OBJ_DATA_UPDATE - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
ACTION_OBJ_DEL - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
actionPerformed(ActionEvent) - Method in class net.cnri.apps.auditgui.AuditWindow
actionPerformed(ActionEvent) - Method in class net.cnri.apps.auditgui.TxnDetailWindow
actionPerformed(ActionEvent) - Method in class net.cnri.apps.doclient.PerformOpWindow
actionPerformed(ActionEvent) - Method in class net.cnri.apps.doclient.StartWindow
actionPerformed(ActionEvent) - Method in class net.cnri.apps.dogui.view.Console
actionPerformed(ActionEvent) - Method in class net.cnri.apps.dogui.view.DOFrame
actionPerformed(ActionEvent) - Method in class net.cnri.apps.dogui.view.HDLAction
actionPerformed(ActionEvent) - Method in class net.cnri.apps.dogui.view.NewUserWindow
actionPerformed(ActionEvent) - Method in class net.cnri.apps.dogui.view.SearchResultInfoWindow
actionPerformed(ActionEvent) - Method in class net.cnri.apps.dogui.view.ShowObjectWindow
actionPerformed(ActionEvent) - Method in class net.cnri.apps.dogui.view.SyncStatusView
actionPerformed(ActionEvent) - Method in class net.cnri.apps.dogui.view.UserInfoPanel
actionPerformed(ActionEvent) - Method in class net.cnri.apps.doutilgui.AuthWindow
actionPerformed(ActionEvent) - Method in class net.cnri.apps.doutilgui.Main
actionToString(byte) - Static method in class net.cnri.apps.doserver.txnlog.Transaction
actualTime - Variable in class net.cnri.apps.doserver.txnlog.Transaction
ADD - Static variable in class net.cnri.apps.dogui.view.DOImages
ADD_OP - Static variable in class net.cnri.apps.test.IndexTest
ADD_RELATIONSHIPS_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
ADD_TYPE_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
addAllFromIterator(Collection<T>, CloseableIterator<T>) - Static method in class net.cnri.repository.util.CollectionUtil: Add all the elements of a given CloseableIterator to a given Collection.
addAttribute(String, String) - Method in class net.cnri.apps.dogui.controller.DOSearch
addAttribute(String) - Method in class net.cnri.apps.dogui.controller.DOSearch
addEntity(EntityMap.Entity) - Method in class net.cnri.do_api.EntityMap
addHeader(String, String) - Method in class net.cnri.dobj.HeaderSet: Adds a header to the header set
addHeader(String, String[]) - Method in class net.cnri.dobj.HeaderSet: Adds a string array header to the header set
addHeader(String, HeaderSet) - Method in class net.cnri.dobj.HeaderSet: Adds a sub-header-set to the header set
addHeader(String, long) - Method in class net.cnri.dobj.HeaderSet: Adds a header to the header set
addHeader(String, int) - Method in class net.cnri.dobj.HeaderSet: Adds a header to the header set
addHeader(String, boolean) - Method in class net.cnri.dobj.HeaderSet: Adds a header to the header set
addHeader(String, byte[]) - Method in class net.cnri.dobj.HeaderSet: Adds a header to the header set
addKeyword(String) - Method in class net.cnri.apps.dogui.controller.DOSearch
addLinkListener(JLinkListener) - Method in class net.cnri.apps.dogui.view.util.JLinkLabel
addListener(SynchronizerStatusListener) - Method in class net.cnri.apps.dogui.controller.DNASynchronizer: Add a listener that will be notified of changes in the status of the synchronizer.
addOperator(String, InputStream) - Method in class net.cnri.apps.doserver.Main: Add the given knowbot to the set of operators for this repository
addPhrase(String) - Method in class net.cnri.apps.dogui.controller.DOSearch
addPullQuery(String, Query) - Method in class net.cnri.repository.syncing.SyncingConfig
addPushQuery(String, Query) - Method in class net.cnri.repository.syncing.SyncingConfig
addQueueListener(TransactionQueueListener) - Method in class net.cnri.apps.doserver.txnlog.AbstractTransactionQueue
addRangeAttribute(String, long, long) - Method in class net.cnri.apps.dogui.controller.DOSearch: Set a numeric range attribute
addRangeAttribute(String, Date, Date) - Method in class net.cnri.apps.dogui.controller.DOSearch: Set a date range attribute
ADDRESS_BOOK_ELEMENT_ID - Static variable in class net.cnri.do_api.EntityMap
ADDRESS_KEY - Static variable in class net.cnri.apps.doserver.Main
AddressBookWindow - Class in net.cnri.apps.dogui.view
AddressBookWindow(JFrame, AdminToolUI, DigitalObject, EntityMap) - Constructor for class net.cnri.apps.dogui.view.AddressBookWindow
AddressBookWindow.AddressEditor - Class in net.cnri.apps.dogui.view
addResult(DOSearchResult) - Method in class net.cnri.apps.dogui.view.SearchResultsList
addText(String) - Method in class net.cnri.apps.dogui.view.ConsolePanel
addToListAttribute(String, String) - Method in class net.cnri.repository.highlevel.HighLevelDigitalObject: Treats the value of the attribute as a new line separated list of strings.
addTransaction(Transaction) - Method in class net.cnri.apps.doserver.txnlog.AbstractTransactionQueue: Log the specified transaction to the current queue (creating a new queue, if necessary
addTransaction(Transaction) - Method in class net.cnri.apps.doserver.txnlog.ConcatenatedTransactionQueue
addTransaction(Transaction) - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue: Log the specified transaction to the current queue (creating a new queue, if necessary
addTransaction(Transaction) - Method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB
addWarToHttpServer(File, String) - Method in class net.cnri.apps.doserver.Main
adjustmentValueChanged(AdjustmentEvent) - Method in class net.cnri.apps.dogui.view.ConsolePanel
AdminToolUI - Class in net.cnri.apps.dogui.view
AdminToolUI(Main) - Constructor for class net.cnri.apps.dogui.view.AdminToolUI
AgentSignerThread - Class in net.cnri.apps.doserver
allGroups(HandleResolver, String) - Static method in class net.cnri.cert.CertUtil: Return all groups to which memberHandle belongs, together with their subgroup chains.
allGroups(HandleResolver, String, List<String>) - Static method in class net.cnri.cert.CertUtil: Return all groups to which memberHandle belongs via one of the initialGroups, together with their subgroup chains.
allImplicitDelegators(String, List<String>) - Method in class net.cnri.dobj.delegation.DelegationClient: List all objects which delegate to the given id via one of the initial delegators.
allImplicitDelegators(String, List<String>, boolean, String) - Method in class net.cnri.dobj.delegation.DelegationClient: List all objects which delegate to the given id via one of the initial delegators.
allImplicitDelegators(DOClient, List<String>) - Static method in class net.cnri.dobj.delegation.DelegationUtil: Returns all delegation chains of the given entity starting with the given initial delegators.
allImplicitDelegators(DOClient, List<String>, boolean, String) - Static method in class net.cnri.dobj.delegation.DelegationUtil: Returns all delegation chains of the given entity starting with the given initial delegators.
allImplicitDelegators(String, List<String>) - Method in class net.cnri.dobj.groups.GroupClient
allImplicitDelegators(DOClient, String, List<String>) - Static method in class net.cnri.dobj.groups.GroupUtil: Returns all delegation chains of the given entity starting with the given initial delegators.
AlphanumericAnalyzer - Class in net.cnri.apps.doserver.operators
AlphanumericAnalyzer() - Constructor for class net.cnri.apps.doserver.operators.AlphanumericAnalyzer
AlphanumericLowerCaseTokenizer - Class in net.cnri.apps.doserver.operators
AlphanumericLowerCaseTokenizer(Reader) - Constructor for class net.cnri.apps.doserver.operators.AlphanumericLowerCaseTokenizer
ANONYMOUS_ID - Static variable in interface net.cnri.dobj.DOConstants
append(InputStream) - Method in class net.cnri.do_api.DataElement: Appends the bytes from the given InputStream to the data element, returning the total number of bytes written.
appendDataElement(String, InputStream) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Appends the bytes from the given input stream to the given data element for the object.
appendDataElement(String, InputStream) - Method in interface net.cnri.dobj.StorageProxy: Appends data from the given InputStream to the data element for the given object ID.
APPLICATION_ERROR - Static variable in exception net.cnri.dobj.DOException
applyBatch(ArrayList<ContentProviderOperation>) - Method in class net.cnri.repository.android.ProviderClientProxy
asList(CloseableIterator<T>) - Static method in class net.cnri.repository.util.CollectionUtil: Return the elements of a given CloseableIterator as a List.
asSet(CloseableIterator<T>) - Static method in class net.cnri.repository.util.CollectionUtil: Return the elements of a given CloseableIterator as a Set.
ATT_NAME - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
ATT_VALUE - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
attColumns - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
ATTRIBUTE_DATA_ELEMENT_MISSING - Static variable in class net.cnri.repository.layered.LayeredDataElement
ATTRIBUTE_DEFAULT_PROJECTION - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
ATTRIBUTE_DELIMETER - Static variable in class net.cnri.repository.bdbje.KeyUtil
ATTRIBUTE_DELIMETER_ARRAY - Static variable in class net.cnri.repository.bdbje.KeyUtil
ATTRIBUTE_NAME - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
ATTRIBUTE_PATH_SEGMENT - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
ATTRIBUTE_PROJECTION - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
ATTRIBUTE_WHERE_NAME - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
AttributeMap - Class in net.cnri.repository.highlevel
AttributeMap(DigitalObject, String) - Constructor for class net.cnri.repository.highlevel.AttributeMap
AttributeQuery - Class in net.cnri.repository.search: A query that matches an object where an attribute has an exact value.
AttributeQuery(String, String) - Constructor for class net.cnri.repository.search.AttributeQuery
attributes - Variable in class net.cnri.apps.doserver.txnlog.Transaction
ATTRIBUTES_FILE_NAME - Static variable in class net.cnri.repository.filesystem.FilesystemDigitalObject
AUDIT_GET_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
AUDIT_QUERY_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
AuditHookImpl - Class in net.cnri.apps.doserver: This class defines an object that provides access to the audit log mechanism on this DO server
AuditLog - Class in net.cnri.apps.doserver: This class defines an object that can record operations on digital objects in a registry server.
AuditLogArchiver - Class in net.cnri.apps.doserver: An AuditLogArchiver object will archive the logs for completed operations.
AuditLogArchiver(AuditLog) - Constructor for class net.cnri.apps.doserver.AuditLogArchiver
AuditWindow - Class in net.cnri.apps.auditgui: Main class for a simple GUI that provides access to the auditing capabilities of a DO server.
AuditWindow(DOClient) - Constructor for class net.cnri.apps.auditgui.AuditWindow
AUTH_DELEGATES_KEY - Static variable in class net.cnri.apps.doserver.Main
authenticateCaller() - Method in interface net.cnri.dobj.DOOperationContext: Requests verification of the callers identity.
authenticateCaller() - Method in interface net.cnri.dobj.edo.EDOOperationContext: Requests verification of the callers identity.
authenticateCaller() - Method in interface net.cnri.repository.internal.Caller: Returns true if the caller is authenticated.
authenticateCaller() - Method in class net.cnri.repository.internal.InternalOperationContext
authenticateCaller() - Method in class net.cnri.repository.internal.SimpleAuthenticatedCaller: Always returns true.
authenticateClient(String, String) - Method in class net.cnri.dobj.DOServerConnection: This method is called by the digital object server to verify the identity of the client using the public key assigned to the ID of the client..
authenticateClient(String, String, PublicKey) - Method in class net.cnri.dobj.DOServerConnection: This method is called by the digital object server to verify the identity of the client using the public key assigned to the ID of the client..
authenticateCredential(String) - Method in interface net.cnri.dobj.DOOperationContext: Verify that this client has been granted a credential by the identified entity.
authenticateCredential(String) - Method in class net.cnri.dobj.DOServerConnection: Verify that this client has been granted a credential by the identified entity.
authenticateCredential(String) - Method in interface net.cnri.dobj.edo.EDOOperationContext: Verify that this client has been granted a credential by the identified entity.
authenticateCredential(String) - Method in interface net.cnri.repository.internal.Caller: Returns true if the caller's credential is authenticated (e.g.
authenticateCredential(String) - Method in class net.cnri.repository.internal.InternalOperationContext
authenticateCredential(String) - Method in class net.cnri.repository.internal.SimpleAuthenticatedCaller: Always returns false.
authenticationChanged(DOAuthentication) - Method in class net.cnri.apps.dogui.view.DOFrame: Default implementation of authenticationChanged method.
authenticationChanged(DOAuthentication) - Method in class net.cnri.apps.dogui.view.MainWindow
AUTHORITY - Static variable in class net.cnri.repository.android.Provider
AuthorizationException - Exception in net.cnri.repository: Repository exception thrown when an operation is unauthorized.
AuthorizationException() - Constructor for exception net.cnri.repository.AuthorizationException
AuthorizationException(String) - Constructor for exception net.cnri.repository.AuthorizationException
Authorizer - Class in net.cnri.apps.doserver: Authorizer objects are used to determine which operations are allowed based on attributes of the request (such as caller ID, object ID, operation ID, etc).
Authorizer(Main) - Constructor for class net.cnri.apps.doserver.Authorizer
Authorizer - Interface in net.cnri.dobj: Objects implementing the Authorizor interface can be used by a server to decide who can perform what operations on which objects.
Authorizer.AuthorizationInfo - Class in net.cnri.apps.doserver
Authorizer.AuthorizationInfo() - Constructor for class net.cnri.apps.doserver.Authorizer.AuthorizationInfo
AuthWindow - Class in net.cnri.apps.doutilgui: Window that can be used to gather authentication information from a user such as their identifier and private/secret key.
AuthWindow(Frame) - Constructor for class net.cnri.apps.doutilgui.AuthWindow
AuthWindow(Frame, String) - Constructor for class net.cnri.apps.doutilgui.AuthWindow: Constructor for a window object that provides an interface for a user to enter their authentication information.
AUTO_OBJECT_PREFIX_KEY - Static variable in class net.cnri.apps.doserver.Main
AUTO_SET_PERMISSIONS_FOR_NEW_OBJECTS - Static variable in class net.cnri.apps.doserver.Main
available() - Method in class net.cnri.repository.util.LimitedInputStream

B

BasicSearchView - Class in net.cnri.apps.dogui.view
BasicSearchView(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.BasicSearchView
BdbjeDataElement - Class in net.cnri.repository.bdbje
BdbjeDataElement(BdbjeDigitalObject, Environment, Database, String, byte[]) - Constructor for class net.cnri.repository.bdbje.BdbjeDataElement
BdbjeDigitalObject - Class in net.cnri.repository.bdbje: The digital object is stored using the berkeleydb base API.
BdbjeDigitalObject(BdbjeRepository, Environment, Database, String, byte[]) - Constructor for class net.cnri.repository.bdbje.BdbjeDigitalObject
BdbjeRepository - Class in net.cnri.repository.bdbje: Digital Object repository built on top of a Berkeley DB JE environment.
BdbjeRepository(File) - Constructor for class net.cnri.repository.bdbje.BdbjeRepository
BdbjeRepository(File, Durability) - Constructor for class net.cnri.repository.bdbje.BdbjeRepository
BdbjeRepository(File, EnvironmentConfig) - Constructor for class net.cnri.repository.bdbje.BdbjeRepository
BdbUtil - Class in net.cnri.repository.bdbje
BdbUtil() - Constructor for class net.cnri.repository.bdbje.BdbUtil
BIND_KEY - Static variable in class net.cnri.apps.doserver.Main
BooleanClause - Class in net.cnri.repository.search: A Boolean clause in a BooleanQuery.
BooleanClause(Query, BooleanClause.Occur) - Constructor for class net.cnri.repository.search.BooleanClause: Constructs an instance.
BooleanClause.Occur - Enum in net.cnri.repository.search: Enumerated type of occurence markers.
BooleanQuery - Class in net.cnri.repository.search: A query reflecting a boolean expression.
BooleanQuery(Collection<BooleanClause>) - Constructor for class net.cnri.repository.search.BooleanQuery: Constructs an instance.
BooleanQuery(Object...) - Constructor for class net.cnri.repository.search.BooleanQuery: Constructs an instance from parameters which are each either BooleanClause, Query, or BooleanClause.Occur.
BsonUtil - Class in net.cnri.repository.util
BsonUtil() - Constructor for class net.cnri.repository.util.BsonUtil
BUFFER_SIZE - Static variable in class net.cnri.apps.doserver.BuilderServlet
BUFFER_SIZE - Static variable in class net.cnri.apps.doserver.HashServlet
BUFFER_SIZE - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
BUFFER_SIZE - Static variable in class net.cnri.apps.doserver.PerformOpServlet
BUFFER_SIZE - Static variable in class net.cnri.apps.doserver.RESTServlet
BUFFER_SIZE - Static variable in class net.cnri.repository.rest.servlet.RequestHandler
BuilderServlet - Class in net.cnri.apps.doserver
BuilderServlet(Main, ExecutorService, HTTPConnectionHandler) - Constructor for class net.cnri.apps.doserver.BuilderServlet
buildKeyGrant(String, SecretKey) - Static method in class net.cnri.do_api.DOKeyRing: This will encrypt the given key using the recipient's public key and encode it into a block of text that can be emailed to an individual.
bulkInsert(Uri, ContentValues[]) - Method in class net.cnri.repository.android.ProviderClientProxy

C

call(String, String, Bundle) - Method in class net.cnri.repository.android.EmbeddedRepository
call(String, String, Bundle) - Method in class net.cnri.repository.android.ProviderClientProxy
call() - Method in class net.cnri.repository.layered.MigrationRepository.MigrationCallable
Caller - Interface in net.cnri.repository.internal: A specification of the credentials of a client connecting to a repository.
CALLER_ID_PARAM - Static variable in class net.cnri.apps.doserver.AuditHookImpl
cancelObjectSync(String) - Method in class net.cnri.repository.android.ClientRepository
canForwardOperation() - Method in class net.cnri.apps.doserver.Authorizer.AuthorizationInfo: Return true if the authorization rule specifies that this operation can be forwarded
canHandleOperation(DOOperationContext) - Method in class net.cnri.apps.doserver.AuditHookImpl: Returns true iff this object can perform the given operation on behalf of the caller on the given object.
canHandleOperation(DOOperationContext) - Method in class net.cnri.apps.doserver.ExternalInterface: Returns true iff this object can perform the given operation on behalf of the caller on the given object.
canHandleOperation(DOOperationContext) - Method in class net.cnri.apps.doserver.operators.AbstractDelegationOperations
canHandleOperation(DOOperationContext) - Method in class net.cnri.apps.doserver.operators.LuceneIndexer
canHandleOperation(DOOperationContext) - Method in class net.cnri.apps.doserver.operators.StandardOperations
canHandleOperation(DOOperationContext) - Method in class net.cnri.apps.doserver.ReplicationOperator: Returns true iff this object can perform the given operation on behalf of the caller on the given object.
canHandleOperation(DOOperationContext) - Method in interface net.cnri.dobj.DOOperation: Returns true iff this object can perform the given operation on behalf of the caller on the given object.
canHandleOperation(EDOOperationContext) - Method in class net.cnri.dobj.edo.EDOOperator: Returns true iff this object can perform the given operation on behalf of the caller on the given object.
canHandleOperation(DOOperationContext) - Method in class net.cnri.knowbots.matrix.MatrixOps
canHandleOperation(DOOperationContext) - Method in class net.cnri.knowbots.standardops.StandardOperations
canImport(JComponent, DataFlavor[]) - Method in class net.cnri.apps.dogui.view.DOTransferHandler
CertGenerator - Class in net.cnri.apps.cmdline
CertGenerator(String, PrivateKey) - Constructor for class net.cnri.apps.cmdline.CertGenerator: Construct a CertGenerator
CertGenerator(String, PrivateKey, PublicKey) - Constructor for class net.cnri.apps.cmdline.CertGenerator: Construct a CertGenerator
CertUtil - Class in net.cnri.cert: A utility class for an unused method of storing group membership certificates in handles.
CertUtil() - Constructor for class net.cnri.cert.CertUtil
CertUtil.GroupChain - Class in net.cnri.cert: A chain of subgroups, whose head is the super-most group.
CertUtil.GroupChain(String, CertUtil.GroupChain) - Constructor for class net.cnri.cert.CertUtil.GroupChain
cgiEscape(String) - Static method in class net.cnri.apps.doserver.web.VelocityUtil
changeAuthentication() - Method in class net.cnri.apps.auditgui.AuditWindow
changeAuthentication() - Method in class net.cnri.apps.doclient.StartWindow
channelCreated(StreamPair) - Method in interface net.cnri.dobj.DOConnectionListener: This is called when a new channel has been created on the server.
CHECK_AUTHORIZATION_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
CHECK_DELEGATE_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
checkAuthorization(String, String[], String, HeaderSet) - Method in class net.cnri.do_api.DigitalObject: Determine whether a user in some groups is authorized to perform an operation with certain parameters on this object.
checkAuthorization(String, String, String) - Method in interface net.cnri.dobj.Authorizer
checkDelegation(DOClient, String, String, String, String) - Static method in class net.cnri.dobj.delegation.DelegationUtil: Returns whether a delegation (e.g.
checkDelegation(DOClient, String, String, String, String) - Static method in class net.cnri.dobj.groups.GroupUtil: Returns whether a delegation (e.g.
checkGroupChain(HandleResolver, String, CertUtil.GroupChain) - Static method in class net.cnri.cert.CertUtil: Check whether memberHandle is a member of the groups in the subgroup chain groups, and that all certificates are signed and valid.
checkGroupMembershipCertificate(byte[], String, String, List<PublicKey>) - Static method in class net.cnri.cert.CertUtil: Check to see if an encoded Attribute Certificate asserts that memberHandle is a member of groupHandle, and is signed by one of the input public keys
checkImplicitDelegation(String, List<String>, String) - Method in class net.cnri.dobj.delegation.DelegationClient: Check whether a delegate is implicitly delegated to by a delegator via one of the initial delegators.
checkImplicitDelegation(String, List<String>, String, boolean, String) - Method in class net.cnri.dobj.delegation.DelegationClient: Check whether a delegate is implicitly delegated to by a delegator via one of the initial delegators.
checkImplicitDelegation(DOClient, String, DelegationChain) - Static method in class net.cnri.dobj.delegation.DelegationUtil: Returns whether an id is an implicit delegate of a delegator via a specified delegation chain.
checkImplicitDelegation(DOClient, String, DelegationChain, boolean, String) - Static method in class net.cnri.dobj.delegation.DelegationUtil: Returns whether an id is an implicit delegate of a delegator via a specified delegation chain.
checkImplicitDelegation(String, List<String>, String) - Method in class net.cnri.dobj.groups.GroupClient
checkImplicitDelegation(DOClient, String, GroupChain) - Static method in class net.cnri.dobj.groups.GroupUtil: Returns whether an id is an implicit delegate of a delegator via a specified delegation chain.
checkPassword(String, String, ServletContext) - Static method in class net.cnri.repository.rest.servlet.ServletUtil
checkpointDatabase() - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Copy the current database to a backup file, and restart the transaction log.
chooseClientAlias(String[], Principal[], Socket) - Method in class net.cnri.dobj.DOSSLKeyManager
chooseEngineClientAlias(String[], Principal[], SSLEngine) - Method in class net.cnri.dobj.DOSSLKeyManager
chooseEngineServerAlias(String, Principal[], SSLEngine) - Method in class net.cnri.dobj.DOSSLKeyManager
chooseServerAlias(String, Principal[], Socket) - Method in class net.cnri.dobj.DOSSLKeyManager
CIPHER_ALG_ATTRIBUTE - Static variable in class net.cnri.do_api.DOKeyRing
clauses() - Method in class net.cnri.repository.search.BooleanQuery
cleanUp() - Method in class net.cnri.repository.layered.MigrationRepository: Checks the reference counter queue for objects which may be deleted.
cleanUp() - Method in class net.cnri.repository.ref.DigitalObjectReferenceCounter: Remove references to DigitalObjects and DataElements that have been garbage collected.
clear() - Method in class net.cnri.apps.dogui.view.ConsolePanel
clear() - Method in class net.cnri.repository.highlevel.AttributeMap
clear() - Method in class net.cnri.repository.networked.HeaderSetPrefixMap
clear() - Method in class net.cnri.repository.networked.MapFromHeaderSet
clear() - Method in class net.cnri.repository.util.StringPairListMap
clearConnections() - Method in class net.cnri.apps.dogui.view.AdminToolUI
clearResults() - Method in class net.cnri.apps.dogui.view.SearchResultsList
clearTags() - Method in class net.cnri.dobj.DOMetadata: Removes all tags from the metadata
CLIENT_AUTH_TYPE_HSPUBKEY - Static variable in interface net.cnri.dobj.DOConstants
CLIENT_AUTH_TYPE_HSSECKEY - Static variable in interface net.cnri.dobj.DOConstants
ClientRepository - Class in net.cnri.repository.android
ClientRepository(Context) - Constructor for class net.cnri.repository.android.ClientRepository
ClientRepository.Destination - Enum in net.cnri.repository.android
ClientRepository.SyncPriority - Enum in net.cnri.repository.android
cloneAuthentication() - Method in class net.cnri.dobj.AbstractAuthentication: The following must be implemented by subclasses of AbstractAuthentication in order to provide a copy of themselves for the purposes of authenticating when retrieving their credentials.
cloneAuthentication() - Method in class net.cnri.dobj.PKAuthentication: The following must be implemented by subclasses of AbstractAuthentication in order to provide a copy of themselves for the purposes of authenticating when retrieving their credentials.
cloneAuthentication() - Method in class net.cnri.dobj.ProxiedAuthentication: The following must be implemented by subclasses of AbstractAuthentication in order to provide a copy of themselves for the purposes of authenticating when retrieving their credentials.
cloneAuthentication() - Method in class net.cnri.dobj.SecretKeyAuthentication: The following must be implemented by subclasses of AbstractAuthentication in order to provide a copy of themselves for the purposes of authenticating when retrieving their credentials.
cloneRule() - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.PermissionComponent
close() - Method in class net.cnri.apps.doserver.HashDirectoryStorage
close() - Method in interface net.cnri.apps.doserver.Storage
close() - Method in interface net.cnri.apps.doserver.txnlog.AbstractTransactionQueue.CloseableEnumeration
close() - Method in class net.cnri.apps.doserver.txnlog.ConcatenatedTransactionQueue.QueueScanner
close() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue.QueueScanner
close() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB.QueueScanner
close() - Method in class net.cnri.do_api.Repository
close() - Method in class net.cnri.dobj.DOConnection
close() - Method in class net.cnri.dobj.emcompat.ServerConnection: Close the repository connection
close() - Method in class net.cnri.dobj.StreamPair
close() - Method in class net.cnri.repository.android.CursorIteratorImpl
close() - Method in class net.cnri.repository.android.EmbeddedRepository
close() - Method in class net.cnri.repository.android.EmptyCursor
close() - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
close() - Method in class net.cnri.repository.bdbje.BdbjeRepository
close() - Method in interface net.cnri.repository.CloseableIterator
close() - Method in class net.cnri.repository.filesystem.FilesystemRepository
close() - Method in class net.cnri.repository.internal.InternalRepository
close() - Method in class net.cnri.repository.layered.LayeredRepository
close() - Method in class net.cnri.repository.memory.MemoryRepository
close() - Method in class net.cnri.repository.networked.NetworkedRepository
close() - Method in interface net.cnri.repository.Repository: Close the repository and release all resources.
close() - Method in class net.cnri.repository.rest.RestRepository
close() - Method in class net.cnri.repository.search.QueryResults
close() - Method in class net.cnri.repository.syncing.SyncingRepository
close() - Method in class net.cnri.repository.util.AbstractCloseableIterator: Calls AbstractCloseableIterator.closeOnlyOnce() only if the iterator has not already been closed.
close() - Method in class net.cnri.repository.util.CloseableIteratorFromIterator: If constructed from an iterator which is an instance of java.io.Closeable, closes it.
close() - Method in class net.cnri.repository.wrapper.RepositoryWrapper
close() - Method in class net.cnri.repository.wrapper.UnionRepository
CloseableIterator<T> - Interface in net.cnri.repository: Iterator which allows a close() operation.
CloseableIteratorFromIterator<T> - Class in net.cnri.repository.util: Wraps a standard java.util.Iterator as a CloseableIterator.
CloseableIteratorFromIterator(Iterator<? extends T>) - Constructor for class net.cnri.repository.util.CloseableIteratorFromIterator
closeAllConnections() - Method in class net.cnri.dobj.DOClient
closeBottom() - Method in class net.cnri.repository.layered.MigrationRepository: Close the bottom layer and stop using it.
CollectionUtil - Class in net.cnri.repository.util: Convenience utilities for Collections, especially Iterators and CloseableIterators.
CollectionUtil() - Constructor for class net.cnri.repository.util.CollectionUtil
compare(Object, Object) - Method in class net.cnri.apps.dogui.view.SearchResultsList.DateComparator
compare(Object, Object) - Method in class net.cnri.apps.dogui.view.SearchResultsList.NameComparator
compare(Object, Object) - Method in class net.cnri.apps.dogui.view.SearchResultsList.TypeComparator
compare(Object, Object) - Method in class net.cnri.apps.doserver.DoSortTool.DoPropertiesComparator
compressLogs(File, boolean) - Method in class net.cnri.apps.doserver.AuditLogArchiver: Compresses all logs that are compressable with the given directory.
concatBytes(byte[], byte[]) - Static method in class net.cnri.repository.bdbje.BdbUtil
concatBytes(byte[], byte[], byte[]) - Static method in class net.cnri.repository.bdbje.BdbUtil
concatBytes(byte[], byte[], byte[], byte[]) - Static method in class net.cnri.repository.bdbje.BdbUtil
concatBytes(byte[], byte[], byte[], byte[], byte[]) - Static method in class net.cnri.repository.bdbje.BdbUtil
concatBytes(byte[], byte[], byte[], byte[], byte[], byte[]) - Static method in class net.cnri.repository.bdbje.BdbUtil
ConcatenatedTransactionQueue - Class in net.cnri.apps.doserver.txnlog: Given the old style file based transaction queue and the new style queue this class provides a common interface concatenating the two queues allowing the data to be iterated over as if in a single queue.
ConcatenatedTransactionQueue(TransactionQueue, AbstractTransactionQueue) - Constructor for class net.cnri.apps.doserver.txnlog.ConcatenatedTransactionQueue
ConcatenatedTransactionQueue.QueueScanner - Class in net.cnri.apps.doserver.txnlog
ConcreteStorageProxy - Class in net.cnri.apps.doserver: ConcreteStorageProxy objects provide an interface to the hash-based storage layer of the DO server.
ConcreteStorageProxy(Storage, String, String, HeaderSet) - Constructor for class net.cnri.apps.doserver.ConcreteStorageProxy: Construct a storage accessor/proxy object that uses the given storage mechanism and restricts access to the given objectID based on the permissions granted to the given callerIDs.
ConcurrentCountingHashMap<T> - Class in net.cnri.repository.util
ConcurrentCountingHashMap() - Constructor for class net.cnri.repository.util.ConcurrentCountingHashMap
CONFIG_DATA_ELEMENT - Static variable in class net.cnri.apps.doserver.Configuration
Configuration - Class in net.cnri.apps.doserver: Configuration objects represent the configuration of a repository.
Configuration(Main, Storage, PrivateKey) - Constructor for class net.cnri.apps.doserver.Configuration
connect(String) - Method in class net.cnri.dobj.DOClientConnection: Connect directly to one of the servers in the service identified by the given identifier.
connect(DOServiceInfo) - Method in class net.cnri.dobj.DOClientConnection: Connect directly to one of the servers in the service
connect(DOServerInfo) - Method in class net.cnri.dobj.DOClientConnection: Connect directly to the given server.
ConnectionEncryption - Class in net.cnri.dobj: Objects of class ConnectionEncryption are capable of encrypting and decrypting traffic on the connection.
ConnectionEncryption() - Constructor for class net.cnri.dobj.ConnectionEncryption
Console - Class in net.cnri.apps.dogui.view
Console(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.Console
ConsolePanel - Class in net.cnri.apps.dogui.view
ConsolePanel() - Constructor for class net.cnri.apps.dogui.view.ConsolePanel
Constants - Class in net.cnri.repository
constructInstance(DOConnection, HeaderSet, HeaderSet) - Static method in class net.cnri.dobj.ConnectionEncryption: Constructs a ConnectionEncryption instance that conforms to the given parameters.
consumeEntity(HttpEntity) - Static method in class net.cnri.repository.rest.RestRepository
consumeQuietly(HttpEntity) - Static method in class net.cnri.repository.rest.RestRepository
containsKey(String) - Method in class net.cnri.apps.dogui.view.resources.Resources
containsKey(Object) - Method in class net.cnri.repository.highlevel.AttributeMap
containsKey(Object) - Method in class net.cnri.repository.networked.HeaderSetPrefixMap
containsKey(Object) - Method in class net.cnri.repository.networked.MapFromHeaderSet
containsNoMustClauses() - Method in class net.cnri.repository.search.BooleanQuery
containsValue(Object) - Method in class net.cnri.repository.highlevel.AttributeMap
containsValue(Object) - Method in class net.cnri.repository.networked.MapFromHeaderSet
CONTENT_DIR_TYPE - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
CONTENT_DIR_TYPE - Static variable in class net.cnri.repository.android.Provider.ElementColumns
CONTENT_DIR_TYPE - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
CONTENT_DISPOSITION_HEADER - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
CONTENT_ELEMENT_ID - Static variable in interface net.cnri.dobj.DOConstants
CONTENT_ITEM_TYPE - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
CONTENT_ITEM_TYPE - Static variable in class net.cnri.repository.android.Provider.ElementColumns
CONTENT_ITEM_TYPE - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
contextDestroyed(ServletContextEvent) - Method in class net.cnri.apps.doserver.HTTPConnectionHandler
contextInitialized(ServletContextEvent) - Method in class net.cnri.apps.doserver.HTTPConnectionHandler
CONTROL_CHANNEL_ID - Static variable in class net.cnri.dobj.DOConnection
convertFromFileName(String) - Static method in class net.cnri.apps.doserver.HashDirectoryStorage: Performs a conversion from the given encoded file name to the string that was encoded to get the file name.
convertToFileName(String) - Static method in class net.cnri.apps.doserver.HashDirectoryStorage: Performs a conversion from the given string to an encoded version that can be used as a file/URL name.
copy(DigitalObject, Repository, List<String>, boolean) - Static method in class net.cnri.repository.Repositories: Copies the digital object and the specified data elements.
copy(Map<String, String>, Repository, Repository, List<String>, boolean) - Static method in class net.cnri.repository.Repositories: Deprecated.
copyContentsToClipboard() - Method in class net.cnri.apps.dogui.view.ConsolePanel
copyDataOrSetAttributeForMissing(DataElement, DataElement) - Static method in class net.cnri.repository.layered.LayeredRepository
copyForLayeredRepo(DigitalObject, DigitalObject) - Static method in class net.cnri.repository.layered.LayeredRepository
copyInto(HeaderSet) - Method in class net.cnri.dobj.HeaderSet
copyObjectFrom(Repository, String) - Method in class net.cnri.do_api.Repository: Create a new object on this repository with the given identifier and return the ID of the new object.
copyStringToBuffer(int, CharArrayBuffer) - Method in class net.cnri.repository.android.EmptyCursor
copyTo(DigitalObject) - Method in class net.cnri.repository.android.EmbeddedDigitalObject
copyTo(DigitalObject) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
copyTo(DigitalObject) - Method in class net.cnri.repository.layered.LayeredDigitalObject
copyTo(DigitalObject) - Method in interface net.cnri.repository.layered.SupportsFastCopyForLayeredRepo: Copy this digital object (in the bottom repository of a LayeredRepository to another digital object (in the top repository).
copyTo(DigitalObject) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
countQueuedObjects(Query) - Method in class net.cnri.repository.android.ClientRepository
CREATE_MODE - Static variable in interface net.cnri.apps.dogui.view.ViewConstants
CREATE_OBJ_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
createCert(String) - Method in class net.cnri.apps.cmdline.CertGenerator: Generate a certificate that certifies the given subject (and their associated public key) as a delegate of this generator's identity
createCert(String, PublicKey) - Method in class net.cnri.apps.cmdline.CertGenerator: Generate a certificate that certifies the given subject (and their associated public key) as a delegate of this generator's identity
createClientCert(Resolver, String, PrivateKey, PublicKey, int) - Static method in class net.cnri.cert.CertUtil: Generate an X509 certificate that can be used to
createDataElement(String, String) - Method in class net.cnri.repository.AbstractDirectRepository
createDataElement(String) - Method in class net.cnri.repository.android.EmbeddedDigitalObject
createDataElement(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
createDataElement(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
createDataElement(String) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
createDataElement(String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
createDataElement(String) - Method in interface net.cnri.repository.DigitalObject: Creates a new data element with the given name in this digital object.
createDataElement(String, String) - Method in interface net.cnri.repository.DirectRepository: Creates a new data element with the given name in this digital object.
createDataElement(String) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
createDataElement(String) - Method in class net.cnri.repository.layered.LayeredDigitalObject
createDataElement(String, String) - Method in class net.cnri.repository.layered.LayeredRepository
createDataElement(String) - Method in class net.cnri.repository.memory.MemoryDigitalObject
createDataElement(String) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
createDataElement(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
createDataElement(String) - Method in class net.cnri.repository.rest.RestDigitalObject
createDataElement(String) - Method in class net.cnri.repository.syncing.SyncingDigitalObject
createDataElement(String, String) - Method in class net.cnri.repository.syncing.SyncingRepository
createDataElement(String) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
createDataElement(String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
CreateDatastream(String, String, String, int) - Method in class net.cnri.dobj.emcompat.ServerConnection: Create a digital object data stream
createDigitalObject(String) - Method in class net.cnri.do_api.Repository: Create a new digital object in this repository and return an interface to that object.
createDigitalObject() - Method in class net.cnri.repository.android.ClientRepository
createDigitalObject(String) - Method in class net.cnri.repository.android.EmbeddedRepository
createDigitalObject(String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
createDigitalObject(String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
createDigitalObject(String) - Method in class net.cnri.repository.filesystem.FilesystemRepository
createDigitalObject(String) - Method in class net.cnri.repository.highlevel.HighLevelRepository
createDigitalObject(String) - Method in class net.cnri.repository.layered.LayeredRepository
createDigitalObject(String) - Method in class net.cnri.repository.memory.MemoryRepository
createDigitalObject(String) - Method in class net.cnri.repository.networked.NetworkedRepository
createDigitalObject(String) - Method in interface net.cnri.repository.Repository: Creates a new digital object with the given identifier in this repository.
createDigitalObject(String) - Method in class net.cnri.repository.rest.RestRepository
createDigitalObject(String) - Method in class net.cnri.repository.syncing.SyncingRepository
createDigitalObject(String) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
createDigitalObject(String) - Method in class net.cnri.repository.wrapper.UnionRepository
createDigitalObjectFromJson(String) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
createDigitalObjectFromJson(String) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
createDigitalObjectsFromDOViews(List<RepositoryJSONSerializer.DOView>) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
createDigitalObjectsFromDOViews(List<RepositoryJsonSerializerV2.DOView>) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
createDigitalObjectsFromJson(String) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
createDigitalObjectsFromJson(String) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
CreateDisseminator(String, String, String, String, String, int) - Method in class net.cnri.dobj.emcompat.ServerConnection: Create a digital object disseminator
CreateDO(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Create a digital object
createGroupMembershipCertificate(BigInteger, String, String, Date, Date, PublicKey, PrivateKey) - Static method in class net.cnri.cert.CertUtil: Create a group membership certificate and sign it with the input private key.
createHandle(byte[], HandleValue[]) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Creates the specified handle in the "database" with the specified initial values
CreateNewUser - Class in net.cnri.apps.dogui.controller
CreateNewUser(DOAuthentication, AuthenticationInfo) - Constructor for class net.cnri.apps.dogui.controller.CreateNewUser
createObject(String) - Method in class net.cnri.apps.dogui.view.MainWindow
createObject(String, String, HeaderSet, long) - Method in class net.cnri.apps.doserver.AbstractStorage
createObject(String) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Creates a new digital object with the given ID, if one does not already exist.
createObject(String, String) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Creates a new digital object with the given ID, if one does not already exist.
createObject(String, String, boolean) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Creates a new digital object with the given ID, if one does not already exist.
createObject(String, String, boolean, long) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Creates a new digital object with the given ID, if one does not already exist.
createObject(String, String, boolean) - Method in interface net.cnri.apps.doserver.Storage: Creates a new digital object with the given ID, if one does not already exist.
createObject(String, String, boolean, long) - Method in interface net.cnri.apps.doserver.Storage: Creates a new digital object with the given ID, if one does not already exist.
createObject(String, String, HeaderSet, long) - Method in interface net.cnri.apps.doserver.Storage: Version with enhanced logging (stores txnMetadata in transaction)
createObject(String) - Method in interface net.cnri.dobj.StorageProxy: Creates a new digital object with the given ID, if one does not already exist.
createObject(String, String) - Method in interface net.cnri.dobj.StorageProxy: Creates a new digital object with the given ID, if one does not already exist.
createSecondaryKey(SecondaryDatabase, DatabaseEntry, DatabaseEntry, DatabaseEntry) - Method in class net.cnri.repository.bdbje.NameValueKeyCreator: Creates a secondary key for each attribute that is set on the database.
CreationException - Exception in net.cnri.repository: Exception thrown by Repository create methods when the object or element to be created already exists.
CreationException() - Constructor for exception net.cnri.repository.CreationException
CreationException(String) - Constructor for exception net.cnri.repository.CreationException
CREATOR - Static variable in class net.cnri.repository.android.ParcelableQuery
CREATOR_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
CRYPTO_ERROR - Static variable in exception net.cnri.dobj.DOException
csvDateEncoding(String) - Static method in class net.cnri.apps.doserver.web.VelocityUtil
CursorIteratorImpl<T> - Class in net.cnri.repository.android: An iterator interface to an android.database.Cursor.
CursorIteratorImpl(Cursor, CursorIteratorImpl.OfCursor<T>) - Constructor for class net.cnri.repository.android.CursorIteratorImpl: Constructs a new CursorIterator from the given cursor and method for translating current cursor state into an object.
CursorIteratorImpl.OfCursor<T> - Interface in net.cnri.repository.android: An encapsulation of a method to return an object from the current state of an android.database.Cursor.

D

DAILY - Static variable in class net.cnri.apps.doserver.Main
DATA_ELEMENT_PREFIX - Static variable in class net.cnri.apps.doserver.operators.StandardOperations
DATA_ELEMENT_PREFIX - Static variable in class net.cnri.knowbots.standardops.StandardOperations
DATA_NOT_PRESENT - Static variable in class net.cnri.repository.util.RepositoryJSONSerializer.DOView.ElementView
DATA_NOT_PRESENT - Static variable in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView.ElementView
DATABASE_NAME - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
DatabaseHelper - Class in net.cnri.repository.android.sqlite
DatabaseHelper(Context) - Constructor for class net.cnri.repository.android.sqlite.DatabaseHelper
dataElement - Variable in class net.cnri.apps.doserver.txnlog.Transaction
DataElement - Class in net.cnri.do_api: This is a high level interface to a data element for a digital object.
DataElement - Interface in net.cnri.repository: An object for accessing a Data Element within a Digital Object.
DataElementWrapper - Class in net.cnri.repository.wrapper
DataElementWrapper(DigitalObject, DataElement) - Constructor for class net.cnri.repository.wrapper.DataElementWrapper
DATE_ARCHIVED_ATTRIBUTE - Static variable in class net.cnri.apps.dogui.view.DetailedSearchView
DATE_CREATED_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
DATE_FORMAT_MDYHMS - Static variable in interface net.cnri.dobj.DOConstants
DATE_MODIFIED_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
dbObjectToDigitalObject(DBObject) - Static method in class net.cnri.repository.util.BsonUtil
deactivate() - Method in class net.cnri.repository.android.EmptyCursor
debug - Variable in class net.cnri.apps.dogui.view.ConsolePanel
DEBUG - Variable in class net.cnri.dobj.DOClient
DEBUG - Variable in class net.cnri.dobj.DOConnection
DEBUG_BLOCKING - Variable in class net.cnri.dobj.DOConnection
DEBUG_BYTES - Variable in class net.cnri.dobj.DOConnection
DEBUG_CONTROL - Variable in class net.cnri.dobj.DOConnection
decode(byte[]) - Static method in class net.cnri.repository.bdbje.BdbUtil
decodeHex(char, char) - Static method in class net.cnri.apps.doserver.HashDirectoryStorage: Decode the given two hexadecimal characters into the byte that they represent.
decodeHexByte(char, char) - Static method in class net.cnri.dobj.HeaderSet
decodeHexByte(byte, byte) - Static method in class net.cnri.dobj.HeaderSet
decodeHexByte(byte, byte) - Static method in class net.cnri.repository.filesystem.FilesystemRepository
decodeISO88591(byte[]) - Static method in class net.cnri.repository.util.StringEncoding
decodeUriSafe(String) - Static method in class net.cnri.repository.util.StringEncoding
decodeUriSafeBytes(String) - Static method in class net.cnri.repository.util.StringEncoding
decodeUTF16BE(byte[]) - Static method in class net.cnri.repository.util.StringEncoding
decodeUTF8(byte[], int, int) - Static method in class net.cnri.dobj.DOConnection: Decode a UTF8 byte array into a String
decodeUTF8(byte[]) - Static method in class net.cnri.dobj.DOConnection: Decode a UTF8 byte array into a String
decrementAndGet(T) - Method in class net.cnri.repository.util.ConcurrentCountingHashMap
decryptDataElement(DataElement) - Method in class net.cnri.do_api.DOKeyRing: If the given data element is encrypted, check our keychain for a key that will decrypt it and use that key to return an InputStream from which the unencrypted data element bytes can be returned.
decryptDataElementUsingKey(int, String, String, DataElement) - Method in class net.cnri.do_api.DOKeyRing
DEFAULT - Static variable in class net.cnri.repository.search.QueryParams: Default query parameters.
DEFAULT_CLIENT_CERT_EXPIRATION_DAYS - Static variable in interface net.cnri.dobj.DOConstants
DEFAULT_DEBUG - Static variable in class net.cnri.dobj.DOConnection
DEFAULT_DEBUG_BLOCKING - Static variable in class net.cnri.dobj.DOConnection
DEFAULT_DEBUG_BYTES - Static variable in class net.cnri.dobj.DOConnection
DEFAULT_DEBUG_CONTROL - Static variable in class net.cnri.dobj.DOConnection
DEFAULT_ELEMENT_REF_ATT - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
DEFAULT_GET_ELEMENT - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
DEFAULT_HTTP_PORT - Static variable in class net.cnri.apps.doserver.Main
DEFAULT_HTTPS_PORT - Static variable in class net.cnri.apps.doserver.Main
DEFAULT_MIME_TYPE - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
DEFAULT_PORT - Static variable in class net.cnri.apps.doserver.Main
DEFAULT_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ElementColumns
DEFAULT_PUBKEY_ALG - Static variable in class net.cnri.apps.dogui.view.ManageGroupsWindow
DEFAULT_PUBKEY_ALG - Static variable in class net.cnri.apps.dogui.view.NewUserWindow
DEFAULT_PUBKEY_SIZE - Static variable in class net.cnri.apps.dogui.view.ManageGroupsWindow
DEFAULT_PUBKEY_SIZE - Static variable in class net.cnri.apps.dogui.view.NewUserWindow
DEFAULT_READ_BUFFER_SIZE - Static variable in class net.cnri.dobj.DOConnection
DEFAULT_SSL_PORT - Static variable in class net.cnri.apps.doserver.Main
DEFAULT_WRITE_BUFFER_SIZE - Static variable in class net.cnri.dobj.DOConnection
DefaultIndexBuilder - Class in net.cnri.apps.doserver.operators
DefaultIndexBuilder() - Constructor for class net.cnri.apps.doserver.operators.DefaultIndexBuilder
DEFINED_RIGHTS_ELEMENT - Static variable in class net.cnri.apps.doserver.Authorizer
DEL_ATTRIBUTES_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
DELEGATES_ELEMENT_ID - Static variable in class net.cnri.apps.doserver.operators.ListElementDelegationOperations
DELEGATES_ELEMENT_ID_PREFIX - Static variable in class net.cnri.apps.doserver.operators.ListElementDelegationOperations
DelegationChain - Class in net.cnri.dobj.delegation: A chain of subgroups, whose head is the super-most group.
DelegationChain(String, DelegationChain) - Constructor for class net.cnri.dobj.delegation.DelegationChain
DelegationClient - Class in net.cnri.dobj.delegation
DelegationClient(DOClient) - Constructor for class net.cnri.dobj.delegation.DelegationClient
delegationObject(String) - Static method in class net.cnri.dobj.delegation.DelegationUtil: Returns the id of the DO which manages delegation for the given id.
DelegationUtil - Class in net.cnri.dobj.delegation
delegator - Variable in class net.cnri.dobj.delegation.DelegationChain
delegator - Variable in class net.cnri.dobj.groups.GroupChain
DELEGATORS_ELEMENT_ID - Static variable in class net.cnri.apps.doserver.operators.ListElementDelegationOperations
DELEGATORS_ELEMENT_ID_PREFIX - Static variable in class net.cnri.apps.doserver.operators.ListElementDelegationOperations
delete() - Method in class net.cnri.repository.AbstractDataElement
delete() - Method in class net.cnri.repository.AbstractDigitalObject
delete() - Method in class net.cnri.repository.android.EmbeddedDataElement
delete() - Method in class net.cnri.repository.android.EmbeddedDigitalObject
delete(Uri, String, String[]) - Method in class net.cnri.repository.android.ProviderClientProxy
delete() - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
delete() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
delete() - Method in class net.cnri.repository.bdbje.BdbjeDataElement
delete() - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
delete() - Method in interface net.cnri.repository.DataElement: Deletes the data element from its digital object.
delete() - Method in interface net.cnri.repository.DigitalObject: Deletes this digital object from the repository through which it is being accessed.
delete() - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
delete() - Method in class net.cnri.repository.memory.MemoryDataElement
delete() - Method in class net.cnri.repository.memory.MemoryDigitalObject
delete() - Method in class net.cnri.repository.networked.NetworkedDataElement
delete() - Method in class net.cnri.repository.networked.NetworkedDigitalObject
delete() - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
delete() - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
delete() - Method in class net.cnri.repository.rest.RestDataElement
delete() - Method in class net.cnri.repository.rest.RestDigitalObject
delete() - Method in class net.cnri.repository.wrapper.DataElementWrapper
delete() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
DELETE_DATA_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
DELETE_OBJ_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
deleteAllRecords() - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Remove all of the records from the database.
DeleteAttachments(String, String, Attachment[]) - Method in class net.cnri.dobj.emcompat.ServerConnection: Delete attachments for a digital object disseminator
deleteAttribute(String) - Method in class net.cnri.do_api.DataElement: Delete the given attributeName for this object.
deleteAttribute(String) - Method in class net.cnri.do_api.DigitalObject: Delete the given attributeName for this object.
deleteAttribute(String, String, String) - Method in class net.cnri.repository.AbstractDirectRepository
deleteAttribute(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
deleteAttribute(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
deleteAttribute(String, String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
deleteAttribute(String) - Method in class net.cnri.repository.bdbje.BdbjeDataElement
deleteAttribute(String) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
deleteAttribute(String, String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
deleteAttribute(String) - Method in interface net.cnri.repository.DataElement: Deletes a particular attribute.
deleteAttribute(String) - Method in interface net.cnri.repository.DigitalObject: Deletes a particular attribute.
deleteAttribute(String, String, String) - Method in interface net.cnri.repository.DirectRepository: Deletes a particular attribute.
deleteAttribute(String) - Method in class net.cnri.repository.filesystem.FilesystemDataElement
deleteAttribute(String) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
deleteAttribute(String) - Method in class net.cnri.repository.layered.LayeredDataElement
deleteAttribute(String) - Method in class net.cnri.repository.layered.LayeredDigitalObject
deleteAttribute(String, String, String) - Method in class net.cnri.repository.layered.LayeredRepository
deleteAttribute(String) - Method in class net.cnri.repository.memory.MemoryDataElement
deleteAttribute(String) - Method in class net.cnri.repository.memory.MemoryDigitalObject
deleteAttribute(String) - Method in class net.cnri.repository.networked.NetworkedDataElement
deleteAttribute(String) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
deleteAttribute(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
deleteAttribute(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
deleteAttribute(String) - Method in class net.cnri.repository.rest.RestDataElement
deleteAttribute(String) - Method in class net.cnri.repository.rest.RestDigitalObject
deleteAttribute(String) - Method in class net.cnri.repository.syncing.SyncingDataElement
deleteAttribute(String) - Method in class net.cnri.repository.syncing.SyncingDigitalObject
deleteAttribute(String, String, String) - Method in class net.cnri.repository.syncing.SyncingRepository
deleteAttribute(String) - Method in class net.cnri.repository.wrapper.DataElementWrapper
deleteAttribute(String) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
deleteAttribute(String, String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
deleteAttributes(String, String, String[], HeaderSet, long) - Method in class net.cnri.apps.doserver.AbstractStorage
deleteAttributes(String[]) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Remove the attributes with the given keys from the object.
deleteAttributes(String, String, String[], boolean, long) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Remove the attributes with the given keys from the object or data element.
deleteAttributes(String, String, String[], boolean, long) - Method in interface net.cnri.apps.doserver.Storage: Remove the attributes with the given keys from the object or data element.
deleteAttributes(String, String, String[], HeaderSet, long) - Method in interface net.cnri.apps.doserver.Storage: Version with enhanced logging (stores txnMetadata in transaction)
deleteAttributes(String[]) - Method in class net.cnri.do_api.DataElement: Atomically delete more than one attribute
deleteAttributes(String[]) - Method in class net.cnri.do_api.DigitalObject: Atomically delete more than one attribute
deleteAttributes(String[]) - Method in interface net.cnri.dobj.StorageProxy: Remove the attributes with the given keys from the object.
deleteAttributes(List<String>) - Method in class net.cnri.repository.AbstractDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.AbstractDigitalObject
deleteAttributes(String, String, List<String>) - Method in class net.cnri.repository.AbstractDirectRepository
deleteAttributes(List<String>) - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
deleteAttributes(String, String, List<String>) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
deleteAttributes(List<String>) - Method in class net.cnri.repository.bdbje.BdbjeDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
deleteAttributes(String, String, List<String>) - Method in class net.cnri.repository.bdbje.BdbjeRepository
deleteAttributes(List<String>) - Method in interface net.cnri.repository.DataElement: Deletes multiple attributes.
deleteAttributes(List<String>) - Method in interface net.cnri.repository.DigitalObject: Deletes multiple attributes.
deleteAttributes(String, String, List<String>) - Method in interface net.cnri.repository.DirectRepository: Deletes multiple attributes.
deleteAttributes(List<String>) - Method in class net.cnri.repository.filesystem.FilesystemDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
deleteAttributes(List<String>) - Method in class net.cnri.repository.layered.LayeredDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.layered.LayeredDigitalObject
deleteAttributes(String, String, List<String>) - Method in class net.cnri.repository.layered.LayeredRepository
deleteAttributes(List<String>) - Method in class net.cnri.repository.memory.MemoryDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.memory.MemoryDigitalObject
deleteAttributes(List<String>) - Method in class net.cnri.repository.networked.NetworkedDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
deleteAttributes(List<String>) - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
deleteAttributes(List<String>) - Method in class net.cnri.repository.rest.RestDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.rest.RestDigitalObject
deleteAttributes(List<String>) - Method in class net.cnri.repository.syncing.SyncingDataElement
deleteAttributes(List<String>) - Method in class net.cnri.repository.syncing.SyncingDigitalObject
deleteAttributes(String, String, List<String>) - Method in class net.cnri.repository.syncing.SyncingRepository
deleteAttributes(List<String>) - Method in class net.cnri.repository.wrapper.DataElementWrapper
deleteAttributes(List<String>) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
deleteAttributes(String, String, List<String>) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
deleteDataElement(String, String, HeaderSet, long) - Method in class net.cnri.apps.doserver.AbstractStorage
deleteDataElement(String) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Deletes the specified data element from the current object.
deleteDataElement(String, String, boolean) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Deletes the specified data element from the given object.
deleteDataElement(String, String, boolean, long) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Deletes the specified data element from the given object.
deleteDataElement(String, String, boolean) - Method in interface net.cnri.apps.doserver.Storage: Deletes the specified data element from the given object.
deleteDataElement(String, String, boolean, long) - Method in interface net.cnri.apps.doserver.Storage: Deletes the specified data element from the given object.
deleteDataElement(String, String, HeaderSet, long) - Method in interface net.cnri.apps.doserver.Storage: Version with enhanced logging (stores txnMetadata in transaction)
deleteDataElement(String) - Method in class net.cnri.do_api.DigitalObject
deleteDataElement(String) - Method in interface net.cnri.dobj.StorageProxy: Deletes the specified data element from the current object.
deleteDataElement(String) - Method in class net.cnri.repository.AbstractDigitalObject
deleteDataElement(String, String) - Method in class net.cnri.repository.AbstractDirectRepository
deleteDataElement(String) - Method in class net.cnri.repository.android.EmbeddedDigitalObject
deleteDataElement(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
deleteDataElement(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
deleteDataElement(String) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
deleteDataElement(String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
deleteDataElement(String) - Method in interface net.cnri.repository.DigitalObject: Deletes any data element of the given name.
deleteDataElement(String, String) - Method in interface net.cnri.repository.DirectRepository: Deletes any data element of the given name.
deleteDataElement(String) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
deleteDataElement(String) - Method in class net.cnri.repository.layered.LayeredDigitalObject
deleteDataElement(String, String) - Method in class net.cnri.repository.layered.LayeredRepository
deleteDataElement(String) - Method in class net.cnri.repository.memory.MemoryDigitalObject
deleteDataElement(String) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
deleteDataElement(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
deleteDataElement(String) - Method in class net.cnri.repository.rest.RestDigitalObject
deleteDataElement(String) - Method in class net.cnri.repository.syncing.SyncingDigitalObject
deleteDataElement(String, String) - Method in class net.cnri.repository.syncing.SyncingRepository
deleteDataElement(String) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
deleteDataElement(String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
DeleteDatastream(String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Delete a digital object data stream
deleteDigitalObject(String) - Method in class net.cnri.do_api.Repository: Deletes a specified digital object from the repository
deleteDigitalObject(String) - Method in class net.cnri.repository.AbstractRepository
deleteDigitalObject(String) - Method in class net.cnri.repository.android.EmbeddedRepository
deleteDigitalObject(String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
deleteDigitalObject(String) - Method in class net.cnri.repository.filesystem.FilesystemRepository
deleteDigitalObject(String) - Method in class net.cnri.repository.layered.LayeredRepository
deleteDigitalObject(String) - Method in class net.cnri.repository.memory.MemoryRepository
deleteDigitalObject(String) - Method in class net.cnri.repository.networked.NetworkedRepository
deleteDigitalObject(String) - Method in interface net.cnri.repository.Repository: Deletes a digital object from the repository.
deleteDigitalObject(String) - Method in class net.cnri.repository.rest.RestRepository
deleteDigitalObject(String) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
deleteDigitalObject(String) - Method in class net.cnri.repository.wrapper.UnionRepository
DeleteDisseminator(String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Delete a digital object disseminator
DeleteDO(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Delete a digital object
deleteElementAttributes(String, String[]) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Remove the attributes with the given keys from the element.
deleteElementAttributes(String, String[]) - Method in interface net.cnri.dobj.StorageProxy: Remove the attributes with the given keys from the element.
deleteHandle(byte[]) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Delete the specified handle in the database.
deleteObject(String, String) - Method in class net.cnri.apps.dogui.view.MainWindow
deleteObject(String, HeaderSet, long) - Method in class net.cnri.apps.doserver.AbstractStorage
deleteObject() - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Deletes the digital object along with all data elements or files that are associated with it.
deleteObject(String, boolean) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Deletes the given object.
deleteObject(String, boolean, long) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Deletes the given object.
deleteObject(String, boolean) - Method in interface net.cnri.apps.doserver.Storage: Deletes the digital object along with all data elements or files that are associated with it.
deleteObject(String, boolean, long) - Method in interface net.cnri.apps.doserver.Storage: Deletes the digital object along with all data elements or files that are associated with it.
deleteObject(String, HeaderSet, long) - Method in interface net.cnri.apps.doserver.Storage: Version with enhanced logging (stores txnMetadata in transaction)
deleteObject() - Method in class net.cnri.do_api.DigitalObject: Deletes this digital object
deleteObject() - Method in interface net.cnri.dobj.StorageProxy: Deletes the current object object along with all data elements or files that are associated with it.
DEPOSIT_WELL - Static variable in class net.cnri.apps.dogui.view.DOImages
DepositWindow - Class in net.cnri.apps.dogui.view
DepositWindow(AdminToolUI, PreDepositWindow) - Constructor for class net.cnri.apps.dogui.view.DepositWindow
describeContents() - Method in class net.cnri.repository.android.ParcelableQuery
DESEncryption - Class in net.cnri.dobj: DESEncryption objects are capable of encrypting/decrypting data based on a secret key.
DESEncryption(DOConnection) - Constructor for class net.cnri.dobj.DESEncryption
deserialize(String) - Static method in class net.cnri.repository.android.ExceptionSerializer
deserializeBundleFromString(String) - Static method in class net.cnri.repository.android.Util
deserializeBundleFromUriComponent(String) - Static method in class net.cnri.repository.android.Util
deserializeObject(String, InputStream) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Reset the object's state and re-initialize it with the data in the given InputStream in the given format.
deserializeObject(String, String, InputStream) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Reset the object's state and re-initialize the object with the data in the given InputStream in the given format.
deserializeObject(String, String, InputStream) - Method in interface net.cnri.apps.doserver.Storage: Reset the object's state and re-initialize the object with the data in the given InputStream in the given format.
deserializeObject(String, InputStream) - Method in interface net.cnri.dobj.StorageProxy: Reset the object's state and re-initialize the object with the data in the given InputStream in the given format.
DetailedSearchView - Class in net.cnri.apps.dogui.view
DetailedSearchView(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.DetailedSearchView
difference(Set<String>, Set<String>) - Static method in class net.cnri.repository.util.CollectionUtil
DigitalObject - Class in net.cnri.do_api: This is a high level interface to an arbitrary digital object.
DigitalObject - Interface in net.cnri.repository: An object for accessing a Digital Object within a Repository.
DigitalObjectReferenceCounter - Class in net.cnri.repository.ref: Counts references by object handle to DigitalObjects and Data Elements.
DigitalObjectReferenceCounter() - Constructor for class net.cnri.repository.ref.DigitalObjectReferenceCounter
digitalObjectToDBObject(DigitalObject) - Static method in class net.cnri.repository.util.BsonUtil
DigitalObjectWrapper - Class in net.cnri.repository.wrapper
DigitalObjectWrapper(RepositoryWrapper, DigitalObject) - Constructor for class net.cnri.repository.wrapper.DigitalObjectWrapper
DirectRepository - Interface in net.cnri.repository: An object for accessing a Digital Object Repository.
DirectRepositoryWrapper - Class in net.cnri.repository.wrapper: A wrapper class for wrapping a Repository as a DirectRepository.
DirectRepositoryWrapper(Repository) - Constructor for class net.cnri.repository.wrapper.DirectRepositoryWrapper
DNAPusher - Class in net.cnri.apps.dogui.controller
DNAPusher(AdminToolUI) - Constructor for class net.cnri.apps.dogui.controller.DNAPusher: Copy all digital objects from the given source into the given destination repository
DNARetriever - Class in net.cnri.apps.dogui.controller
DNARetriever(AdminToolUI) - Constructor for class net.cnri.apps.dogui.controller.DNARetriever: Copy all digital objects from the given source to the destination.
DNASynchronizer - Class in net.cnri.apps.dogui.controller
DNASynchronizer() - Constructor for class net.cnri.apps.dogui.controller.DNASynchronizer: Copy all digital objects listed in the sourceList from the given source to the destination.
DO_AUTHENTICATION_REQ_ATTRIBUTE - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
DO_ID - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
DO_ID - Static variable in class net.cnri.repository.android.Provider.ElementColumns
DO_PULL_REPLICATION_KEY - Static variable in class net.cnri.apps.doserver.Main
DO_PUSH_REPLICATION_KEY - Static variable in class net.cnri.apps.doserver.Main
DOAPISample - Class in net.cnri.apps.test
DOAPISample() - Constructor for class net.cnri.apps.test.DOAPISample
DOAuthentication - Interface in net.cnri.dobj: Interface for objects that can be used to authenticate themselves to the other side of a DOConnection link.
DOClient - Class in net.cnri.dobj: This class describes an object that provides communication capabilities with the entire digital object system.
DOClient(String, DOServerConnection) - Constructor for class net.cnri.dobj.DOClient
DOClient(DOAuthentication) - Constructor for class net.cnri.dobj.DOClient: Create a DOClient instance set up to authenticate with the given information
DOClientConnection - Class in net.cnri.dobj: This class provides the interface for client software to communicate using the DO protocol with a specific digital object server.
DOClientConnection(DOAuthentication) - Constructor for class net.cnri.dobj.DOClientConnection: Instantiate a new DOClientConnection with the specified identity and authentication information.
DOConfiguration - Class in net.cnri.dobj.config
DOConnection - Class in net.cnri.dobj: This class encapsulates the connection to a digital object server.
DOConnection(DOAuthentication) - Constructor for class net.cnri.dobj.DOConnection
DOConnectionListener - Interface in net.cnri.dobj: DOConnectionListener specifies an interface for objects that can receive notification of events on a DO connection, such as a new channel being opened.
DOConstants - Interface in net.cnri.dobj: Constants for use with the Digital Object Registry and associated systems.
DOCUMENT - Static variable in class net.cnri.apps.dogui.view.DOImages
documentOfDigitalObject(DigitalObject) - Method in class net.cnri.apps.doserver.operators.DefaultIndexBuilder
documentOfDigitalObject(DigitalObject) - Method in interface net.cnri.apps.doserver.operators.IndexBuilder: Creates a Lucene Document from an object accessed remotely.
documentOfStorageProxy(StorageProxy) - Method in class net.cnri.apps.doserver.operators.DefaultIndexBuilder
documentOfStorageProxy(StorageProxy) - Method in interface net.cnri.apps.doserver.operators.IndexBuilder: Creates a Lucene Document from an object in local storage.
documentOfStorageProxy(StorageProxy) - Method in class net.cnri.apps.doserver.operators.JsonIndexBuilder
DOES_OBJ_EXIST_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
doesDataElementExist(String) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Returns true if the given data element exists
doesDataElementExist(String, String) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Returns true if the given data element exists
doesDataElementExist(String, String) - Method in interface net.cnri.apps.doserver.Storage: Returns true if the given data element exists
doesDataElementExist(String) - Method in interface net.cnri.dobj.StorageProxy: Returns true if the given data element exists
doesKnowbotNeedUpdate(String, String, int) - Method in class net.cnri.apps.dogui.controller.Main: Returns whether or not the given knowbot needs an update if the latest version is the one given.
doesObjectExist() - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Returns true if the given digital object exists.
doesObjectExist(String) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Returns true if the given digital object exists.
doesObjectExist(String) - Method in interface net.cnri.apps.doserver.Storage: Returns true if the given digital object exists.
doesObjectExist() - Method in interface net.cnri.dobj.StorageProxy: Returns true if the given digital object exists.
DOExample - Class in net.cnri.apps.sample: This class includes simple code to perform common functions using the DO API
DOExample() - Constructor for class net.cnri.apps.sample.DOExample
DOException - Exception in net.cnri.dobj: Exception used in most digital object components.
DOException(int, String) - Constructor for exception net.cnri.dobj.DOException
DOException(int, String, Throwable) - Constructor for exception net.cnri.dobj.DOException
DOFrame - Class in net.cnri.apps.dogui.view
DOFrame(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.DOFrame
DOFrame(String, AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.DOFrame
DOImages - Class in net.cnri.apps.dogui.view
DOKeyRing - Class in net.cnri.do_api: This is an interface to a set of encrypted keys that can be used to open encrypted documents in digital objects.
DOKeyRing(PrivateKey, DigitalObject) - Constructor for class net.cnri.do_api.DOKeyRing
DOMetadata - Class in net.cnri.dobj: Storage class for metadata about a digital object.
DOMetadata() - Constructor for class net.cnri.dobj.DOMetadata
DOOperation - Interface in net.cnri.dobj: Objects implementing the DOOperation interface can be used to perform an operation on a digital object in a repository.
DOOperationContext - Interface in net.cnri.dobj: Objects implementing DOOperationContext provide access to the "system" so that operators can perform their jobs.
DOP_LISTEN_BACKLOG - Static variable in class net.cnri.apps.doserver.Main
DOPermissionEditor - Class in net.cnri.apps.dogui.view
DOPermissionEditor(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.DOPermissionEditor
DOPermissionEditor.DORule - Class in net.cnri.apps.dogui.view
DOPermissionEditor.DORule(String) - Constructor for class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
DOPermissionEditor.EntityRenderer - Class in net.cnri.apps.dogui.view
DOPermissionEditor.OperationRenderer - Class in net.cnri.apps.dogui.view
DOPermissionEditor.PermissionComponent - Class in net.cnri.apps.dogui.view
DOPermissionEditor.PermissionComponent(DOPermissionEditor.DORule) - Constructor for class net.cnri.apps.dogui.view.DOPermissionEditor.PermissionComponent
DOPermissionEditor.PermissionComponent() - Constructor for class net.cnri.apps.dogui.view.DOPermissionEditor.PermissionComponent
DOPSSL_LISTEN_BACKLOG - Static variable in class net.cnri.apps.doserver.Main
DOSearch - Class in net.cnri.apps.dogui.controller: DOSearch represents a set of search terms that can include complete phrases, individual keywords, and attributed keywords such as att:author:dickens.
DOSearch() - Constructor for class net.cnri.apps.dogui.controller.DOSearch: Initialize an empty search object
DOSearch(String) - Constructor for class net.cnri.apps.dogui.controller.DOSearch: Initialize a new search object using the given query
doSearch(String) - Method in class net.cnri.apps.doserver.web.SearchableMap
doSearch(HeaderSet) - Method in class net.cnri.apps.doserver.web.SearchableMap
DOSearch.SearchAttribute - Class in net.cnri.apps.dogui.controller
DOSearchResult - Class in net.cnri.apps.dogui.controller: A DOSearchResults object contains the results of executing a DOSearch.
DOSearchResult(HeaderSet) - Constructor for class net.cnri.apps.dogui.controller.DOSearchResult: Initialize an empty set of search results
DOServerConnection - Class in net.cnri.dobj: This class provides the interface for server software to communicate using the DO protocol with a digital object client.
DOServerConnection(DOAuthentication, Socket) - Constructor for class net.cnri.dobj.DOServerConnection
DOServerConnection(DOAuthentication, Socket, DOConnectionListener) - Constructor for class net.cnri.dobj.DOServerConnection: Construct a server-side connection handler using the given socket.
DOServerConnection(DOAuthentication, Socket, DOConnectionListener, DelegationClient) - Constructor for class net.cnri.dobj.DOServerConnection
DOServerInfo - Class in net.cnri.dobj
DOServerOperationContext - Class in net.cnri.apps.doserver
DOServerOperationContext() - Constructor for class net.cnri.apps.doserver.DOServerOperationContext
DOServiceInfo - Class in net.cnri.dobj
DOServiceInfo(String) - Constructor for class net.cnri.dobj.DOServiceInfo
DOServiceInfo(String, DOServerInfo[]) - Constructor for class net.cnri.dobj.DOServiceInfo
DOServiceInfo(String, String, int, byte[]) - Constructor for class net.cnri.dobj.DOServiceInfo: Convenience constructor for a service with a single server
DoSortTool - Class in net.cnri.apps.doserver
DoSortTool() - Constructor for class net.cnri.apps.doserver.DoSortTool
DoSortTool.DoPropertiesComparator - Class in net.cnri.apps.doserver
DoSortTool.DoPropertiesComparator(List) - Constructor for class net.cnri.apps.doserver.DoSortTool.DoPropertiesComparator
DOSSLKeyManager - Class in net.cnri.dobj: This object is used to provide a private key for authentication to the other side of a secure socket connection.
DOSSLKeyManager(PKAuthentication) - Constructor for class net.cnri.dobj.DOSSLKeyManager
DOSSLKeyManager(PKAuthentication, PublicKey) - Constructor for class net.cnri.dobj.DOSSLKeyManager
DOSSLTrustManager - Class in net.cnri.dobj: This object is used to determine whether the other side of a secure socket connection is authenticated or not based on their Handle and Digital Object authentication.
DOSSLTrustManager() - Constructor for class net.cnri.dobj.DOSSLTrustManager
doTest() - Method in class net.cnri.apps.test.LoadTestViaAPI
doTest(String) - Method in class net.cnri.apps.test.TestMM
doTestInNewThread() - Method in class net.cnri.apps.test.LoadTestViaAPI
doTestInNewThread(String) - Method in class net.cnri.apps.test.TestMM
DOTransferHandler - Class in net.cnri.apps.dogui.view
DOTransferHandler(AdminToolUI, ShowObjectWindow) - Constructor for class net.cnri.apps.dogui.view.DOTransferHandler
DOUtil - Class in net.cnri.apps.dogui.controller: Miscellaneous utility functions
DOUtil() - Constructor for class net.cnri.apps.dogui.controller.DOUtil
DOViewPanel - Class in net.cnri.apps.dogui.view: A GUI panel that displays and allows interaction with a DigitalObject User: sreilly Date: 5/26/11 Time: 2:43 PM
DOViewPanel(AdminToolUI, DigitalObject) - Constructor for class net.cnri.apps.dogui.view.DOViewPanel
DOWN_ARROW - Static variable in class net.cnri.apps.dogui.view.SyncStatusView

E

EDIT_MODE - Static variable in interface net.cnri.apps.dogui.view.ViewConstants
EDOOperationContext - Interface in net.cnri.dobj.edo: Interface provided to EDOOperator instances in order to allow access to the operation ID, operation parameters, caller ID, the target object's storage, and the other details of the operation invocation.
EDOOperator - Class in net.cnri.dobj.edo: Interface for dynamically loaded digital object "operators".
EDOOperator() - Constructor for class net.cnri.dobj.edo.EDOOperator
EDOTypeInfo - Class in net.cnri.dobj.edo: The EDOTypeInfo class contains information about a single digital object type.
EDOTypeInfo(String) - Constructor for class net.cnri.dobj.edo.EDOTypeInfo
EDOTypeInfo(String, String[]) - Constructor for class net.cnri.dobj.edo.EDOTypeInfo
EL_CONTENT_DIR_TYPE - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
EL_ID - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
ELEMENT_ATTRIBUTE_DATA_NOT_PRESENT - Static variable in class net.cnri.repository.Constants: Element attribute "internal.data_not_present", set to "1" to indicate that the data for this data element is not available through this repository.
ELEMENT_ATTRIBUTE_DEFAULT_PROJECTION - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
ELEMENT_ATTRIBUTE_DELIMETER - Static variable in class net.cnri.repository.bdbje.KeyUtil
ELEMENT_ATTRIBUTE_DELIMETER_ARRAY - Static variable in class net.cnri.repository.bdbje.KeyUtil
ELEMENT_ATTRIBUTE_PROJECTION - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
ELEMENT_ATTRIBUTE_TYPE - Static variable in class net.cnri.repository.Constants: mimetype
ELEMENT_ATTRIBUTE_WHERE_NAME - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
ELEMENT_ATTS_MSGTYPE - Static variable in interface net.cnri.dobj.DOConstants
ELEMENT_DELIMETER - Static variable in class net.cnri.repository.bdbje.KeyUtil
ELEMENT_DELIMETER_ARRAY - Static variable in class net.cnri.repository.bdbje.KeyUtil
ELEMENT_ID - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
ELEMENT_KEY_FORMAT - Static variable in class net.cnri.do_api.DOKeyRing
ELEMENT_NAME - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
ELEMENT_NAME - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
ELEMENT_NAME - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
ELEMENT_NAME_CONTENT - Static variable in class net.cnri.repository.Constants: content
ELEMENT_PATH_SEGMENT - Static variable in class net.cnri.repository.android.Provider.ElementColumns
ELEMENT_WHERE_NAME - Static variable in class net.cnri.repository.android.Provider.ElementColumns
ElementAttributeQuery - Class in net.cnri.repository.search: A query that matches an object where an element attribute has an exact value.
ElementAttributeQuery(String, String, String) - Constructor for class net.cnri.repository.search.ElementAttributeQuery
elementToDBObject(DataElement) - Static method in class net.cnri.repository.util.BsonUtil
elNameOnlyColumns - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
EM_COMMAND_CREATE_DATASTREAM - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_CREATE_DISSEMINATOR - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_CREATE_DO - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_DELETE_ATTACHMENTS - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_DELETE_DATASTREAM - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_DELETE_DISSEMINATOR - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_DELETE_DO - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_DATASTREAM_BYTES - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_DATASTREAM_KEY_METADATA - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_DISSEMINATION - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_DISSEMINATOR_METADATA - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_EXECUTABLE - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_KEY_METADATA - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_READ_REQUEST - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_SERVLET - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_TYPE_SIGNATURE - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_GET_VERSION - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_LIST_ATTACHMENTS - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_LIST_DATASTREAMS - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_LIST_DISSEMINATORS - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_LIST_DO - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_LIST_DO_POLICIES - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_SET_ATTACHMENTS - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_SET_DATASTREAM_BYTES - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_SET_DO_POLICIES - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_SET_EXECUTABLE - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_SET_READ_REQUEST - Static variable in interface net.cnri.dobj.DOConstants
EM_COMMAND_VERIFY_DO - Static variable in interface net.cnri.dobj.DOConstants
EmbeddedDataElement - Class in net.cnri.repository.android
EmbeddedDataElement(EmbeddedDigitalObject, Uri, String) - Constructor for class net.cnri.repository.android.EmbeddedDataElement
EmbeddedDigitalObject - Class in net.cnri.repository.android
EmbeddedDigitalObject(EmbeddedRepository, Uri, String) - Constructor for class net.cnri.repository.android.EmbeddedDigitalObject
EmbeddedRepository - Class in net.cnri.repository.android: Implements the Repository interface by writing data to an Android ContentProvider backed by an SQLite database.
EmbeddedRepository(Context, String) - Constructor for class net.cnri.repository.android.EmbeddedRepository: Creates an EmbeddedRepository pointing to a specific content provider specified by its authority.
EmptyCursor - Class in net.cnri.repository.android: An implementation of Cursor.
EmptyCursor() - Constructor for class net.cnri.repository.android.EmptyCursor
ENABLE_AUDIT_LOGS_KEY - Static variable in class net.cnri.apps.doserver.Main
encode(String) - Static method in class net.cnri.repository.bdbje.BdbUtil
encodeAsPascalString(String) - Static method in class net.cnri.repository.bdbje.BdbUtil
encodeHex(byte[], int, int, StringBuffer) - Static method in class net.cnri.apps.doserver.HashDirectoryStorage: Encode the given byte array into a hexadecimal string.
encodeISO88591(String) - Static method in class net.cnri.repository.util.StringEncoding: Convert a string to bytes using the ISO-8859-1 encoding.
encodeTxn(Transaction, OutputStream) - Static method in class net.cnri.apps.doserver.txnlog.Transaction: Encode the given transaction and write it to the given OutputStream.
encodeUriSafe(String) - Static method in class net.cnri.repository.util.StringEncoding: Ridiculously optimized encoding and decoding of arbitrary strings into URL-safe path segments.
encodeUriSafeBytes(byte[]) - Static method in class net.cnri.repository.util.StringEncoding
encodeURLComponent(String) - Static method in class net.cnri.apps.doserver.web.VelocityUtil
encodeUTF16BE(String) - Static method in class net.cnri.repository.util.StringEncoding
encodeUTF8(String) - Static method in class net.cnri.dobj.DOConnection: Encode a String into a UTF8 byte array
END_DATE_PARAM - Static variable in class net.cnri.apps.doserver.AuditHookImpl
ensureIndexUpToDate() - Method in class net.cnri.repository.networked.NetworkedRepository: Sends the repository a 1037/indexUpToDate operation.
ENTIRE_OBJECT_DEFAULT_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
ENTIRE_OBJECT_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
ENTITY_LIST - Static variable in class net.cnri.do_api.EntityMap
EntityMap - Class in net.cnri.do_api: An EntityMap stores a mapping from identifiers to local, human readable names.
EntityMap() - Constructor for class net.cnri.do_api.EntityMap
EntityMap.Entity - Class in net.cnri.do_api
EntityMap.Entity() - Constructor for class net.cnri.do_api.EntityMap.Entity
entrySet() - Method in class net.cnri.repository.highlevel.AttributeMap
entrySet() - Method in class net.cnri.repository.networked.HeaderSetPrefixMap
entrySet() - Method in class net.cnri.repository.networked.MapFromHeaderSet
entrySet() - Method in class net.cnri.repository.util.StringPairListMap
equals(Object) - Method in class net.cnri.apps.dogui.view.SearchResultsList.DateComparator
equals(Object) - Method in class net.cnri.apps.dogui.view.SearchResultsList.NameComparator
equals(Object) - Method in class net.cnri.apps.dogui.view.SearchResultsList.TypeComparator
equals(Object) - Method in class net.cnri.dobj.HeaderItem
equals(Object) - Method in class net.cnri.dobj.HeaderSet
equals(Object) - Method in class net.cnri.repository.AbstractDigitalObject
equals(Object) - Method in class net.cnri.repository.util.Pair
err - Variable in class net.cnri.apps.doserver.SetupHelper
ERROR_RESPONSE_CODE - Static variable in class net.cnri.dobj.DOConnection
escape(CharSequence) - Static method in class net.cnri.repository.filesystem.FilesystemDigitalObject
EventApi - Class in net.cnri.repository.android: This class provides static methods allowing any app to record events in the Agora repository which will be automatically migrated to the device manager and on to the aggregation servers for analysis.
EventApi() - Constructor for class net.cnri.repository.android.EventApi
ExceptionSerializer - Class in net.cnri.repository.android
ExceptionSerializer() - Constructor for class net.cnri.repository.android.ExceptionSerializer
executeInContext() - Method in class net.cnri.apps.doserver.operators.LuceneIndexer
executeInContext() - Method in class net.cnri.apps.doserver.operators.StandardOperations
executeInContext() - Method in class net.cnri.knowbots.matrix.MatrixOps
executeInContext() - Method in class net.cnri.knowbots.standardops.StandardOperations
EXTERNAL_HD - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
ExternalInterface - Class in net.cnri.apps.doserver: This class defines an object that provides access to internal server operations.
extractAttributeName(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
extractAttributeNameBytes(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
extractElementName(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
extractHandle(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
extractHandleBytes(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
extraDateString(HeaderItem) - Static method in class net.cnri.apps.doserver.web.VelocityUtil

F

FastDateFormat - Class in net.cnri.repository.util: A thread-safe and high-performance class for formatting and parsing dates.
FastDateFormat(TimeZone) - Constructor for class net.cnri.repository.util.FastDateFormat: Constructs a FastDateFormat using the specified time zone, or UTC if given null.
FastDateFormat(FastDateFormat.FormatSpec, TimeZone) - Constructor for class net.cnri.repository.util.FastDateFormat: Constructs a FastDateFormat using the specified default format spec and the specified time zone, or UTC if given null.
FastDateFormat.FormatSpec - Class in net.cnri.repository.util: Specification of how to format a date.
FastDateFormat.FormatSpec(String, String, String, String, String, boolean, boolean) - Constructor for class net.cnri.repository.util.FastDateFormat.FormatSpec: Constructs a format specification.
FEDERATED_INDEXES_KEY - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
FILE_NAME_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
FileDataElement - Interface in net.cnri.repository: Interface for DataElements which can be accessed as files.
FilesystemDataElement - Class in net.cnri.repository.filesystem
FilesystemDataElement(FilesystemDigitalObject, File, String) - Constructor for class net.cnri.repository.filesystem.FilesystemDataElement
FilesystemDigitalObject - Class in net.cnri.repository.filesystem
FilesystemDigitalObject(FilesystemRepository, File, String) - Constructor for class net.cnri.repository.filesystem.FilesystemDigitalObject
FilesystemRepository - Class in net.cnri.repository.filesystem: Digital Object repository built on top of a file system.
FilesystemRepository(File) - Constructor for class net.cnri.repository.filesystem.FilesystemRepository
fillWindow(int, CursorWindow) - Method in class net.cnri.repository.android.EmptyCursor
FilteringCloseableIteratorWrapper<T> - Class in net.cnri.repository.util: CloseableIterator which returns the result of returning only some of the objects returned by a given CloseableIterator.
FilteringCloseableIteratorWrapper(CloseableIterator<T>) - Constructor for class net.cnri.repository.util.FilteringCloseableIteratorWrapper
finalize() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue
finalize() - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage
finishProcessing(long) - Method in interface net.cnri.apps.doserver.txnlog.TransactionCallback: Finish processing this request.
flush() - Method in class net.cnri.apps.doserver.LoggerOutputStream
FOLDER_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
forEach(Iterator<T>) - Static method in class net.cnri.repository.util.CollectionUtil: A convenience method to use an iterator in a for-each loop.
format(long) - Method in class net.cnri.repository.util.FastDateFormat: Formats a given time using the default format spec.
format(long, boolean) - Method in class net.cnri.repository.util.FastDateFormat: Formats a given time using the default format spec.
format(FastDateFormat.FormatSpec, long) - Method in class net.cnri.repository.util.FastDateFormat: Formats a given time in a profile of ISO8601.
format(FastDateFormat.FormatSpec, long, boolean) - Method in class net.cnri.repository.util.FastDateFormat: Formats a given time in a profile of ISO8601.
format(long, TimeZone) - Static method in class net.cnri.repository.util.FastDateFormat: Formats a given time in the default format spec (2012-11-02T23:39:05.346-05:00), using a specified time zone.
format(FastDateFormat.FormatSpec, long, TimeZone) - Static method in class net.cnri.repository.util.FastDateFormat: Formats a given time in a profile of ISO8601, using a specified time zone.
formatDate(Date) - Static method in class net.cnri.apps.dogui.controller.DOSearch: Format a java.util.Date object into a string representation suitable for date ranges in searches.
formatDate(Date) - Static method in class net.cnri.apps.doserver.web.MetadataUtil
formatNow() - Method in class net.cnri.repository.util.FastDateFormat: Formats the current time using the default format spec, caching format calculations for increased performance over many calls.
formatNow(FastDateFormat.FormatSpec) - Method in class net.cnri.repository.util.FastDateFormat: Formats the current time in a profile of ISO8601, caching format calculations for increased performance over many calls.
formatUtc(long) - Static method in class net.cnri.repository.util.FastDateFormat: Formats a given time in the default format spec (2012-11-02T23:39:05.346Z), using UTC.
formatUtc(FastDateFormat.FormatSpec, long) - Static method in class net.cnri.repository.util.FastDateFormat: Formats a given time in a profile of ISO8601, using UTC.
FORWARDING_ELEMENT - Static variable in class net.cnri.apps.doserver.Authorizer
forwardingIsAllowed(DOOperationContext, Authorizer.AuthorizationInfo) - Method in class net.cnri.apps.doserver.Authorizer: This is called to determine if and how the given operation can be forwarded to a remote repository.
fromBson(byte[]) - Static method in class net.cnri.repository.util.BsonUtil
fromByteArray(byte[]) - Static method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB
fromByteArray(byte[]) - Static method in class net.cnri.repository.bdbje.BdbUtil
fromJSON(String) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
fromJSON(String) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2

G

generateElementAttributKey(String, String, String) - Static method in class net.cnri.repository.bdbje.NameValueKeyCreator
generateEncryptionKey() - Method in class net.cnri.do_api.DOKeyRing: Create and return a SecretKey suitable for object encryption
generateKey(String, String) - Static method in class net.cnri.repository.bdbje.NameValueKeyCreator
generateKeys(String, int, byte[], File, File) - Static method in class net.cnri.apps.cmdline.KeyGenerator
generateKeys(File, File, String) - Method in class net.cnri.apps.doserver.SetupHelper
GenericEncryption - Class in net.cnri.dobj: GenericEncryption objects are capable of encrypting/decrypting data based on a secret key.
GenericEncryption(DOConnection) - Constructor for class net.cnri.dobj.GenericEncryption
GenericSyncIntervalManager - Class in net.cnri.repository.syncing
GenericSyncIntervalManager(long) - Constructor for class net.cnri.repository.syncing.GenericSyncIntervalManager
get(int) - Method in class net.cnri.dobj.HeaderSet
get(Object) - Method in class net.cnri.repository.highlevel.AttributeMap
get(Object) - Method in class net.cnri.repository.networked.HeaderSetPrefixMap
get(Object) - Method in class net.cnri.repository.networked.MapFromHeaderSet
get(String) - Method in class net.cnri.repository.ref.DigitalObjectReferenceCounter: Return the number of tracked references to the given handle.
get(T) - Method in class net.cnri.repository.util.ConcurrentCountingHashMap
get(Object) - Method in class net.cnri.repository.util.StringPairListMap
GET_ATTRIBUTES_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
GET_CREDENTIALS_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
GET_DATA_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
GET_OP - Static variable in class net.cnri.apps.test.IndexTest
GET_REPO_TXNS_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
GET_SERIALIZED_FORM_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
getAccessString(HandleValue) - Method in class net.cnri.apps.dogui.view.HandleValueRenderer
getAddressBook() - Method in class net.cnri.apps.dogui.view.AdminToolUI: Return the address book associated with this user
getAnalyzer() - Method in class net.cnri.apps.doserver.operators.DefaultIndexBuilder
getAnalyzer() - Method in interface net.cnri.apps.doserver.operators.IndexBuilder: Returns the analyzer used to write documents into the index.
getAndLockIndexSearcherWrapper() - Method in class net.cnri.apps.doserver.operators.IndexSearcherManager
getAnonymousAuth() - Static method in class net.cnri.dobj.AbstractAuthentication
getAppMenu() - Method in class net.cnri.apps.dogui.view.AdminToolUI
getAsListAttribute(String) - Method in class net.cnri.repository.highlevel.HighLevelDigitalObject: Treats the value of the attribute as a new line separated list of strings.
GetAttachedExe(String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Set the executable for a servlet or signature disseminator
getAttribute(String, String) - Method in class net.cnri.do_api.DataElement: Associates the given attributeValue with the given attributeName for this object.
getAttribute(String, String) - Method in class net.cnri.do_api.DigitalObject: Associates the given attributeValue with the given attributeName for this object.
getAttribute(String, String) - Method in class net.cnri.do_api.EntityMap.Entity: Gets the value that is associated with the given attribute within this entity or defaultVal if there is no value associated with the given attribute.
getAttribute(String) - Method in class net.cnri.repository.AbstractDataElement
getAttribute(String) - Method in class net.cnri.repository.AbstractDigitalObject
getAttribute(String, String, String) - Method in class net.cnri.repository.AbstractDirectRepository
getAttribute(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
getAttribute(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
getAttribute(String, String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
getAttribute(String) - Method in class net.cnri.repository.bdbje.BdbjeDataElement
getAttribute(String) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
getAttribute(String, String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
getAttribute(String) - Method in interface net.cnri.repository.DataElement: Returns the value for a particular attribute
getAttribute(String) - Method in interface net.cnri.repository.DigitalObject: Returns the value for a particular attribute
getAttribute(String, String, String) - Method in interface net.cnri.repository.DirectRepository: Returns the value for a particular attribute
getAttribute(String) - Method in class net.cnri.repository.filesystem.FilesystemDataElement
getAttribute(String) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
getAttribute(String) - Method in class net.cnri.repository.layered.LayeredDataElement
getAttribute(String) - Method in class net.cnri.repository.layered.LayeredDigitalObject
getAttribute(String, String, String) - Method in class net.cnri.repository.layered.LayeredRepository
getAttribute(String) - Method in class net.cnri.repository.memory.MemoryDataElement
getAttribute(String) - Method in class net.cnri.repository.memory.MemoryDigitalObject
getAttribute(String) - Method in class net.cnri.repository.networked.NetworkedDataElement
getAttribute(String) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
getAttribute(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
getAttribute(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
getAttribute(String) - Method in class net.cnri.repository.rest.RestDataElement
getAttribute(String) - Method in class net.cnri.repository.rest.RestDigitalObject
getAttribute(String) - Method in class net.cnri.repository.wrapper.DataElementWrapper
getAttribute(String) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
getAttribute(String, String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
getAttributeKey(String, String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getAttributeKey(byte[], String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getAttributeName() - Method in class net.cnri.repository.rest.servlet.RequestPath
getAttributeName() - Method in class net.cnri.repository.search.AttributeQuery
getAttributeName() - Method in class net.cnri.repository.search.ElementAttributeQuery
getAttributes() - Method in class net.cnri.apps.dogui.controller.DOSearch: Return an iterator of SearchAttribute objects
getAttributes(HeaderSet) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Get all of the key-value attributes that are associated with the object.
getAttributes(String, String, HeaderSet) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Get the value that has been associated with the given key.
getAttributes() - Method in class net.cnri.apps.doserver.HTTPConnectionHandler.ElementType
getAttributes(String, String, HeaderSet) - Method in interface net.cnri.apps.doserver.Storage: Get the attributes for the given object or element within the object.
getAttributes() - Method in class net.cnri.do_api.DataElement: Return all attributes
getAttributes() - Method in class net.cnri.do_api.DigitalObject: Return all attributes
getAttributes(HeaderSet) - Method in interface net.cnri.dobj.StorageProxy: Get all of the key-value attributes that are associated with the object.
getAttributes() - Method in class net.cnri.repository.AbstractDataElement
getAttributes() - Method in class net.cnri.repository.AbstractDigitalObject
getAttributes(String, String) - Method in class net.cnri.repository.AbstractDirectRepository
getAttributes() - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
getAttributes() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
getAttributes(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
getAttributes(String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
getAttributes() - Method in interface net.cnri.repository.DataElement: Returns a Map view of the attributes of the data element.
getAttributes() - Method in interface net.cnri.repository.DigitalObject: Returns a Map view of the attributes of the digital object.
getAttributes(String, String) - Method in interface net.cnri.repository.DirectRepository: Returns a Map view of the attributes of the digital object or data element.
getAttributes() - Method in class net.cnri.repository.filesystem.FilesystemDataElement
getAttributes() - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
getAttributes() - Method in class net.cnri.repository.layered.LayeredDataElement
getAttributes() - Method in class net.cnri.repository.layered.LayeredDigitalObject
getAttributes(String, String) - Method in class net.cnri.repository.layered.LayeredRepository
getAttributes() - Method in class net.cnri.repository.memory.MemoryDataElement
getAttributes() - Method in class net.cnri.repository.memory.MemoryDigitalObject
getAttributes() - Method in class net.cnri.repository.networked.NetworkedDataElement
getAttributes() - Method in class net.cnri.repository.networked.NetworkedDigitalObject
getAttributes() - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
getAttributes() - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
getAttributes() - Method in class net.cnri.repository.rest.RestDataElement
getAttributes() - Method in class net.cnri.repository.rest.RestDigitalObject
getAttributes() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView.ElementView
getAttributes() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView
getAttributes() - Method in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView.ElementView
getAttributes() - Method in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView
getAttributes() - Method in class net.cnri.repository.wrapper.DataElementWrapper
getAttributes() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
getAttributes(String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
getAttributeSearchKey(String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getAtts() - Method in class net.cnri.do_api.SearchResult.Element
getAtts() - Method in class net.cnri.do_api.SearchResult
getAuditLogEntry(File, String, int) - Method in class net.cnri.apps.doserver.AuditLogArchiver: Returns an InputStream with the contents of the given file, whether archived or not.
getAuth() - Method in class net.cnri.apps.doserver.Main: Returns the DOAuthentication that identifies this server.
getAuthentication(boolean) - Method in class net.cnri.apps.dogui.view.AdminToolUI
getAuthentication() - Method in class net.cnri.apps.doutilgui.AuthWindow
getAuthID() - Method in class net.cnri.dobj.DOConnection: Return the identifier that we are using to identify ourself
getAuthorizationDelegateAttributes() - Method in class net.cnri.apps.doserver.Main
getAuthorizer() - Method in class net.cnri.apps.doserver.Main: Return the Authorizer that determines which operations are allowed by whom
getAutoSetPermissionsForNewObjects() - Method in class net.cnri.apps.doserver.Main: Returns true if newly created objects should have all access permissions for
getBaseFolder() - Method in class net.cnri.apps.doserver.Main: Return the folder under which all of this server's configuration and other components are located.
getBlob(int) - Method in class net.cnri.repository.android.EmptyCursor
getBoolean(String, boolean) - Method in class net.cnri.apps.doserver.SetupHelper
getBooleanHeader(String, boolean) - Method in class net.cnri.dobj.HeaderSet: Returns the boolean value for the last header with the given name.
getBottom() - Method in class net.cnri.repository.layered.LayeredRepository
getByteAfterHandle(byte[], int) - Static method in class net.cnri.repository.bdbje.KeyUtil
getCallerID() - Method in interface net.cnri.dobj.DOOperationContext: Returns the identity of the caller.
getCallerID() - Method in interface net.cnri.dobj.edo.EDOOperationContext: Returns the identity of the caller.
getCallerId() - Method in interface net.cnri.repository.internal.Caller: Returns the id (handle) of the caller.
getCallerID() - Method in class net.cnri.repository.internal.InternalOperationContext
getCallerId() - Method in class net.cnri.repository.internal.SimpleAuthenticatedCaller: Returns the id used to construct this instance.
getCause() - Method in exception net.cnri.repository.UncheckedRepositoryException
getCertFactory() - Static method in class net.cnri.apps.doserver.operators.StandardOperations
getCertificateChain(String) - Method in class net.cnri.dobj.DOSSLKeyManager
getClientAddress() - Method in class net.cnri.apps.doserver.DOServerOperationContext
getClientAddress() - Method in interface net.cnri.repository.internal.Caller: Returns the internet address of the client.
getClientAddress() - Method in class net.cnri.repository.internal.InternalOperationContext
getClientAddress() - Method in class net.cnri.repository.internal.SimpleAuthenticatedCaller: Returns the loopback address.
getClientAliases(String, Principal[]) - Method in class net.cnri.dobj.DOSSLKeyManager
getCloseableScanner(long) - Method in class net.cnri.apps.doserver.txnlog.AbstractTransactionQueue: Returns an Enumeration of Transaction objects starting after the given timestamp.
getCloseableScanner(long) - Method in class net.cnri.apps.doserver.txnlog.ConcatenatedTransactionQueue
getCloseableScanner(long) - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue: Returns an Enumeration of Transaction objects starting after the given timestamp.
getCloseableScanner(long) - Method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB
getColumnCount() - Method in class net.cnri.repository.android.EmptyCursor
getColumnIndex(String) - Method in class net.cnri.repository.android.EmptyCursor
getColumnIndexOrThrow(String) - Method in class net.cnri.repository.android.EmptyCursor
getColumnName(int) - Method in class net.cnri.repository.android.EmptyCursor
getColumnNames() - Method in class net.cnri.repository.android.EmptyCursor
getCommand() - Method in class net.cnri.apps.dogui.view.HDLAction
getConfig() - Method in class net.cnri.repository.syncing.SyncingRepository
getConfigKeys() - Method in class net.cnri.apps.doserver.Main: Get an iterator over the set of server configuration keys
getConfiguration() - Static method in class net.cnri.dobj.config.DOConfiguration: Get the current default configuration.
getConfigVal(String) - Method in class net.cnri.apps.doserver.Main: Get the value from the configuration table that is associated with the given key
getConfigVal(String, String) - Method in class net.cnri.apps.doserver.Main: Get the value from the configuration table that is associated with the given key.
getConnection() - Method in class net.cnri.apps.doserver.InternalRepository: Internal method to return the underlying connection that is used to communicate with this Repository.
getConnection() - Method in class net.cnri.do_api.Repository: Internal method to return the underlying connection that is used to communicate with this Repository.
getConnectionMapping(Object) - Method in interface net.cnri.dobj.DOOperationContext: Returns the object from the connection-level information table that had previously been used as the mappingData parameter for a call to setConnectionMapping with the given mappingKey on the same connection.
getConnectionMapping(Object) - Method in class net.cnri.dobj.DOServerConnection: Returns the object from the connection-level information table that had previously been used as the mappingData parameter for a call to setConnectionMapping with the given mappingKey.
getConnectionMapping(Object) - Method in interface net.cnri.dobj.edo.EDOOperationContext: Returns the object from the connection-level information table that had previously been used as the mappingData parameter for a call to setConnectionMapping with the given mappingKey on the same connection.
getConnectionMapping(Object) - Method in interface net.cnri.repository.internal.Caller: Retrieve arbitrary information stored for the caller across multiple operations.
getConnectionMapping(Object) - Method in class net.cnri.repository.internal.InternalOperationContext
getConnectionMapping(Object) - Method in class net.cnri.repository.internal.SimpleAuthenticatedCaller: Always returns null.
getConnectionToRepository(String) - Method in class net.cnri.dobj.DOClient: Return a connection to the given repository.
getContentDateModified() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the date the content was last modified or 0 if not known
getContentEncryptionAlgorithm() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the encryption algorithm that was used to encrypt the content element
getContentEncryptionKeyID() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the fingerprint of the key that was used to encrypt the content element
getContentFileName() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the file name for the object
getContentMimeType() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the mime type that was associated with the content
getContentSize() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the length of the content or -1 if the length is not known
getCount() - Method in class net.cnri.repository.android.EmptyCursor
getCredentialIDs() - Method in interface net.cnri.dobj.DOOperationContext: Returns a list of unverified IDs that the client claims as credentials.
getCredentialIDs() - Method in class net.cnri.dobj.DOServerConnection: Returns a list of unverified IDs that the client claims as credentials.
getCredentialIDs() - Method in interface net.cnri.dobj.edo.EDOOperationContext: Returns a list of unverified IDs that the client claims as credentials.
getCredentialIds() - Method in interface net.cnri.repository.internal.Caller: Returns a list of ids (such as groups) which the caller claims as credentials.
getCredentialIDs() - Method in class net.cnri.repository.internal.InternalOperationContext
getCredentialIds() - Method in class net.cnri.repository.internal.SimpleAuthenticatedCaller: Always returns null.
getCredentials() - Method in class net.cnri.dobj.AbstractAuthentication: Retrieve the credentials from this user's digital object so that they can be presented to any servers during authentication.
getCredentials() - Method in interface net.cnri.dobj.DOAuthentication: Returns any certificates that supplement this entities authentication
getCredentials() - Method in class net.cnri.dobj.ProxiedAuthentication: Returns an empty list since the proxied authentication returns a list of credentials in the signChallenge() method.
getCredentials() - Method in class net.cnri.dobj.SecretKeyAuthentication: Retrieve the credentials from this user's digital object so that they can be presented to any servers during authentication.
getData() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView.ElementView
getData() - Method in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView.ElementView
getDataElement(String) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Returns the identified data element for this object.
getDataElement(String, String) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Returns the identified data element for the given object.
getDataElement(String, String) - Method in interface net.cnri.apps.doserver.Storage: Returns the identified data element for the given object.
getDataElement(String) - Method in class net.cnri.do_api.DigitalObject: Return a reference to the given data element within this object
getDataElement(String) - Method in interface net.cnri.dobj.StorageProxy: Returns a stream for reading the identified data element for this object.
getDataElement(String) - Method in class net.cnri.repository.android.EmbeddedDigitalObject
getDataElement(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
getDataElement(String) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
getDataElement(String) - Method in interface net.cnri.repository.DigitalObject: Returns the data element with the given name.
getDataElement(String) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
getDataElement(String) - Method in class net.cnri.repository.layered.LayeredDigitalObject
getDataElement(String) - Method in class net.cnri.repository.memory.MemoryDigitalObject
getDataElement(String) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
getDataElement(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
getDataElement(String) - Method in class net.cnri.repository.rest.RestDigitalObject
getDataElement(String) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
getDataElementByContext(String, String) - Method in interface net.cnri.dobj.edo.EDOOperationContext: Return an input stream that reads the identified data element based on the given context ID.
getDataElementID() - Method in class net.cnri.do_api.DataElement: Returns the data element's identifier within the object
getDataElementNames() - Method in class net.cnri.repository.AbstractDigitalObject
getDataElementNames() - Method in class net.cnri.repository.android.EmbeddedDigitalObject
getDataElementNames() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
getDataElementNames() - Method in interface net.cnri.repository.DigitalObject: Return a list of the names of the data elements in this digital object.
getDataElementNames() - Method in class net.cnri.repository.rest.RestDigitalObject
getDataElementNames() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
getDataElements() - Method in class net.cnri.repository.AbstractDigitalObject
getDataElements() - Method in class net.cnri.repository.android.EmbeddedDigitalObject
getDataElements() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
getDataElements() - Method in interface net.cnri.repository.DigitalObject: Returns a list of the data elements in this digital object.
getDataElements() - Method in class net.cnri.repository.rest.RestDigitalObject
getDataElements() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
GetDataStream(String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Helper to retrieve all of a digital object data stream
GetDataStreamBytes(String, String, long, long) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves bytes from a digital object data stream
GetDataStreamBytes(String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves bytes from a digital object data element as a stream.
GetDatastreamMetadata(String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves the key metadata for a digital object's data stream
getDataString() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView.ElementView
getDataString() - Method in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView.ElementView
getDataStringAsBytes() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView.ElementView
getDataStringAsBytes() - Method in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView.ElementView
getDateCreated() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the date that the object was created or 0 if the creation date is not known.
getDateCreated() - Method in class net.cnri.do_api.DataElement: Return the date that this object was created
getDateCreated() - Method in class net.cnri.do_api.DigitalObject: Return the date that this object was created
getDateCreated() - Method in class net.cnri.dobj.DOMetadata: Returns the date that the DO was most recently created.
getDateDeleted() - Method in class net.cnri.dobj.DOMetadata: Returns the date that the DO was most recently deleted.
getDateLastModified() - Method in class net.cnri.do_api.DataElement: Return the date that this object was last modified
getDateLastModified() - Method in class net.cnri.do_api.DigitalObject: Return the date that this object was last modified
getDateModified() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the date that the object was created or 0 if the creation date is not known.
getDateRange(String) - Method in class net.cnri.apps.dogui.controller.DOSearch: Return the date range value for an attribute.
getDateRange() - Method in class net.cnri.apps.dogui.controller.DOSearch.SearchAttribute
getDb() - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
getDelegationClient() - Method in class net.cnri.apps.doserver.Main: Return delegation client that is used to verify group membership
getDepositDropHandler() - Method in class net.cnri.apps.dogui.view.AdminToolUI
getDigitalObject() - Method in class net.cnri.do_api.DataElement: Return the DigitalObject of which this element is a part
getDigitalObject(String) - Method in class net.cnri.do_api.Repository: If the specified digital object exists in the repository, this method will return an instance of the DigitalObject class corresponding to that object.
getDigitalObject() - Method in class net.cnri.repository.android.EmbeddedDataElement
getDigitalObject(String) - Method in class net.cnri.repository.android.EmbeddedRepository
getDigitalObject() - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
getDigitalObject(String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
getDigitalObject() - Method in class net.cnri.repository.bdbje.BdbjeDataElement
getDigitalObject(String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
getDigitalObject() - Method in interface net.cnri.repository.DataElement: Returns the digital object of this data element.
getDigitalObject() - Method in class net.cnri.repository.filesystem.FilesystemDataElement
getDigitalObject(String) - Method in class net.cnri.repository.filesystem.FilesystemRepository
getDigitalObject(String) - Method in class net.cnri.repository.highlevel.HighLevelRepository
getDigitalObject() - Method in class net.cnri.repository.layered.LayeredDataElement
getDigitalObject(String) - Method in class net.cnri.repository.layered.LayeredRepository
getDigitalObject() - Method in class net.cnri.repository.memory.MemoryDataElement
getDigitalObject(String) - Method in class net.cnri.repository.memory.MemoryRepository
getDigitalObject() - Method in class net.cnri.repository.networked.NetworkedDataElement
getDigitalObject(String) - Method in class net.cnri.repository.networked.NetworkedRepository
getDigitalObject() - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
getDigitalObject(String) - Method in interface net.cnri.repository.Repository: Returns the digital object with the given identifier from this repository.
getDigitalObject() - Method in class net.cnri.repository.rest.RestDataElement
getDigitalObject(String) - Method in class net.cnri.repository.rest.RestRepository
getDigitalObject() - Method in class net.cnri.repository.wrapper.DataElementWrapper
getDigitalObject(String) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
getDigitalObject(String) - Method in class net.cnri.repository.wrapper.UnionRepository
GetDissemination(String, String, String, NamedTypedValue[]) - Method in class net.cnri.dobj.emcompat.ServerConnection: Disseminates a digital object
GetDisseminatorMetadata(String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves the key metadata for a digital object's disseminator
getDOClientWithForwardedAuthentication(String) - Method in class net.cnri.apps.doserver.DOServerOperationContext: Return a DOClient instance that forwards any authentication challenges back to the DOP client on the other end of this connection.
getDOClientWithForwardedAuthentication(String) - Method in class net.cnri.repository.internal.InternalOperationContext
getDouble(int) - Method in class net.cnri.repository.android.EmptyCursor
getDOViewsFromURL(String) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
getDOViewsFromURL(String) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
getDuration() - Method in class net.cnri.repository.util.Timer
getElement(String) - Method in class net.cnri.do_api.SearchResult
getElementAttributeKey(String, String, String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getElementAttributeKey(byte[], String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getElementAttributes(String, HeaderSet) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Get all of the key-value attributes that are associated with the given element in the object.
getElementAttributes(String, HeaderSet) - Method in interface net.cnri.dobj.StorageProxy: Get all of the key-value attributes that are associated with the given element in the object.
getElementAttributeSearchKey(String, String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getElementFile(String, String, boolean) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
getElementID() - Method in class net.cnri.do_api.SearchResult.Element
getElementId() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView.ElementView
getElementKey(String, String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getElementKey(byte[], String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getElementLink() - Method in class net.cnri.apps.doserver.HTTPConnectionHandler.ElementType
getElementName() - Method in class net.cnri.repository.rest.servlet.RequestPath
getElementName() - Method in class net.cnri.repository.search.ElementAttributeQuery
getElements() - Method in class net.cnri.do_api.SearchResult
getElements() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView
getElements() - Method in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView
getEmbeddedRepository(Context) - Static method in class net.cnri.repository.android.EmbeddedRepository: Creates a repository used to access the embedded repository on the Android device.
getEntities() - Method in class net.cnri.do_api.EntityMap: Return a java.util.List containing the EntityMap.Entity objects in the list.
getEntity(int) - Method in class net.cnri.do_api.EntityMap: Return the address book entity at the given index
getEntityForID(String) - Method in class net.cnri.do_api.EntityMap: Return the entity with the given ID or null if no entity has that ID.
getEntityLabel(String) - Method in class net.cnri.do_api.EntityMap: Return a label that can be used to describe the entity having the given ID.
getEntityName(String, String) - Method in class net.cnri.do_api.EntityMap: Return the name that is associated with the given ID.
getErrorCode() - Method in exception net.cnri.dobj.DOException
getExplicitAccepts(StorageProxy, String) - Method in class net.cnri.apps.doserver.Authorizer: Return a list of entities who are explicitly given permission to perform the given operation on the object.
getExternalAddress() - Method in class net.cnri.apps.doserver.SetupHelper
getExtras() - Method in class net.cnri.repository.android.EmptyCursor
getExtras() - Method in class net.cnri.repository.search.QueryParams
getFields() - Method in class net.cnri.do_api.SearchResult.Element
getFields() - Method in class net.cnri.do_api.SearchResult
getFile(String, String) - Method in class net.cnri.repository.AbstractDirectRepository
getFile() - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
getFile(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
getFile() - Method in class net.cnri.repository.bdbje.BdbjeDataElement
getFile(String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
getFile(String, String) - Method in interface net.cnri.repository.DirectRepository: Returns a file for the data of the data element.
getFile() - Method in interface net.cnri.repository.FileDataElement: Returns a file for the data of the data element.
getFile() - Method in class net.cnri.repository.filesystem.FilesystemDataElement
getFile(String, String) - Method in class net.cnri.repository.layered.LayeredRepository
getFile(String, String) - Method in class net.cnri.repository.memory.MemoryRepository
getFile(String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
getFileForDataElement(String) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Returns the File in which the given data element is stored, if any.
getFileForDataElement(String, String) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Returns the File in which the given data element is stored, if any.
getFileForDataElement(String, String) - Method in interface net.cnri.apps.doserver.Storage: Returns the File in which the given data element is stored, if any.
getFileForDataElement(String) - Method in interface net.cnri.dobj.StorageProxy: Returns the File in which the given data element is stored, if any.
getFirstAttribute(String) - Method in class net.cnri.apps.dogui.controller.DOSearch: Return the value of the first attribute, if any, that is associated with the given name
getFirstDate() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue
getFirstDateInLog() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue.QueueScanner
getFloat(int) - Method in class net.cnri.repository.android.EmptyCursor
getFolder() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the folder that applies to this object
getFriendlyMessageForException(Exception) - Static method in exception net.cnri.dobj.DOException
getGreatestModifiedFromRemote() - Method in class net.cnri.repository.syncing.SyncingRepository
GetHandle() - Method in class net.cnri.dobj.emcompat.ServerConnection: Accessor for the handle of this repository
getHandle() - Method in class net.cnri.repository.AbstractRepository
getHandle() - Method in class net.cnri.repository.android.EmbeddedDigitalObject
getHandle() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
getHandle() - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
getHandle() - Method in interface net.cnri.repository.DigitalObject: Returns the identifier for this digital object.
getHandle() - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
getHandle() - Method in class net.cnri.repository.layered.LayeredDigitalObject
getHandle() - Method in class net.cnri.repository.memory.MemoryDigitalObject
getHandle() - Method in class net.cnri.repository.networked.NetworkedDigitalObject
getHandle() - Method in class net.cnri.repository.networked.NetworkedRepository
getHandle() - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
getHandle() - Method in interface net.cnri.repository.Repository: Returns the handle of the repository.
getHandle() - Method in class net.cnri.repository.rest.RestDigitalObject
getHandle() - Method in class net.cnri.repository.rest.RestRepository
getHandle() - Method in class net.cnri.repository.rest.servlet.RequestPath
getHandle() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
getHandle() - Method in class net.cnri.repository.wrapper.RepositoryWrapper
getHandle() - Method in class net.cnri.repository.wrapper.UnionRepository
getHandleKey(String) - Static method in class net.cnri.repository.bdbje.KeyUtil
getHandlesForNA(byte[]) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Scan the database for handles with the given naming authority and return an Enumeration of byte arrays with each byte array being a handle.
getHashString() - Method in class net.cnri.repository.util.HashAndSalt
getHeaderSubset(String) - Method in class net.cnri.dobj.HeaderSet: Returns a new HeaderSet with the key-value pairs for which the keys have the given prefix.
getHexByteArrayHeader(String, byte[]) - Method in class net.cnri.dobj.HeaderSet: Returns the byte array value for the last header with the given name.
getHostAddress() - Method in class net.cnri.dobj.DOServerInfo
getHosted() - Method in class net.cnri.apps.doserver.SetupHelper
getHTTPPort() - Method in class net.cnri.apps.doserver.SetupHelper
getHTTPSPort() - Method in class net.cnri.apps.doserver.SetupHelper
getIcon(String) - Method in class net.cnri.apps.dogui.view.DOImages: Get an icon with the given path as a resource.
getIcon(String) - Method in class net.cnri.apps.dogui.view.HDLAction
getID() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the identifier of the object
getID() - Method in class net.cnri.apps.doutilgui.AuthWindow
getID() - Method in class net.cnri.do_api.DigitalObject
getID() - Method in class net.cnri.do_api.EntityMap.Entity: Return the identifier (handle) for this entity
getID() - Method in interface net.cnri.dobj.DOAuthentication: Returns the identifier of the calling code.
getID() - Method in class net.cnri.dobj.PKAuthentication: Returns the identifier representing the entity that is supposed to be authenticated by this object.
getID() - Method in class net.cnri.dobj.ProxiedAuthentication: Returns the identifier of the entity whose authentication is being proxied
getID() - Method in class net.cnri.dobj.SecretKeyAuthentication: Returns the identifier representing the entity that is supposed to be authenticated by this object.
getId() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView
getId() - Method in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView
getImage(String) - Method in class net.cnri.apps.dogui.view.DOImages: Get an image with the given path as a resource.
getImages() - Method in class net.cnri.apps.dogui.view.AdminToolUI
getImpliedOperationIterator() - Method in class net.cnri.dobj.edo.EDOTypeInfo: Return an iterator over the operations that are implied by this type
getImpliedOperations() - Method in class net.cnri.dobj.edo.EDOTypeInfo: Return an array of the operation IDs that are implied by this type
getIndexSearcher() - Method in class net.cnri.apps.doserver.operators.IndexSearcherManager.LockTrackingIndexSearcherWrapper
getInputStream() - Method in class net.cnri.dobj.StreamPair
getInt(int) - Method in class net.cnri.repository.android.EmptyCursor
getInteger(String, int) - Method in class net.cnri.apps.doserver.SetupHelper: Prompt the user for a positive integer.
getInteger(String, int, int, int) - Method in class net.cnri.apps.doserver.SetupHelper: Prompt the user for a positive integer (within specified limits, if any).
getInternalAddress() - Method in class net.cnri.apps.doserver.SetupHelper
getIntHeader(String, int) - Method in class net.cnri.dobj.HeaderSet: Returns the integer value for the last header with the given name.
getIPAddress(String, InetAddress) - Method in class net.cnri.apps.doserver.SetupHelper
getIterator() - Method in class net.cnri.do_api.Repository.QueryResults
getJSONFromURL(String) - Static method in class net.cnri.repository.util.HttpClientUtil
getJSONFromURL(String) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
getJSONFromURL(String) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
getKey() - Method in class net.cnri.apps.doserver.HTTPConnectionHandler.AttributePair
getKey() - Method in class net.cnri.repository.util.Pair
GetKeyMetadata(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves the key metadata for a digital object
getKeyRing() - Method in class net.cnri.apps.dogui.view.AdminToolUI: Return the DOKeyRing for this user
getKeys() - Method in class net.cnri.apps.dogui.view.resources.Resources
getKeywords() - Method in class net.cnri.apps.dogui.controller.DOSearch: Return an iterator of String objects representing keywords
getKnownServerIDName(String, String) - Method in class net.cnri.dobj.config.DOConfiguration: Returns a descriptive name (if any is known) for the given ID from the list of known server IDs.
getKnownServerIDs() - Method in class net.cnri.dobj.config.DOConfiguration: Returns an Iterator containing a list of identifiers for servers that are already known to this client.
getLabel() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Returns a label that describes this item.
getLastSyncTime() - Method in class net.cnri.repository.syncing.SyncingRepository
getLastTimestamp() - Method in class net.cnri.apps.doserver.txnlog.AbstractTransactionQueue
getLastTimestamp() - Method in class net.cnri.apps.doserver.txnlog.ConcatenatedTransactionQueue
getLastTimestamp() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue
getLastTimestamp() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.EntityRenderer
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.OperationRenderer
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class net.cnri.apps.dogui.view.HandleValueRenderer
getListenPort() - Method in class net.cnri.apps.doserver.SetupHelper
getLocalContentProvider() - Method in class net.cnri.repository.android.ProviderClientProxy
getLocalFormat() - Static method in class net.cnri.repository.util.FastDateFormat: Returns a FastDateFormat which uses the local time zone, TimeZone.getDefault().
getLogAccesses() - Method in class net.cnri.apps.doserver.SetupHelper: Return whether or not the repository should log accesses
getLogEntry(ThreadSafeDateFormat, boolean) - Method in class net.cnri.apps.doserver.DOServerOperationContext: Return a line of text that represents this request in the log file
getLoggedTxn(HeaderSet) - Static method in class net.cnri.apps.doserver.ReplicationManager
getLogSaveInterval() - Method in class net.cnri.apps.doserver.SetupHelper: Return rotation interval for logs
getLong(int) - Method in class net.cnri.repository.android.EmptyCursor
getLongHeader(String, long) - Method in class net.cnri.dobj.HeaderSet: Returns the long (64 bit integer) value for the last header with the given name.
getMain() - Method in class net.cnri.apps.dogui.view.AdminToolUI
getMessage() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer
getMessage() - Method in exception net.cnri.dobj.DOException
getMessage() - Method in exception net.cnri.repository.RepositoryException
getMessageType() - Method in class net.cnri.dobj.HeaderSet: Get the message type for this HeaderSet.
getMPAtts() - Method in class net.cnri.do_api.SearchResult.Element
getName() - Method in class net.cnri.apps.dogui.controller.DOSearch.SearchAttribute
getName() - Method in class net.cnri.apps.dogui.view.HDLAction
getName() - Method in class net.cnri.dobj.HeaderItem
getName() - Method in class net.cnri.repository.android.EmbeddedDataElement
getName() - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
getName() - Method in class net.cnri.repository.bdbje.BdbjeDataElement
getName() - Method in interface net.cnri.repository.DataElement: Returns the name of this data element.
getName() - Method in class net.cnri.repository.filesystem.FilesystemDataElement
getName() - Method in class net.cnri.repository.highlevel.AttributeMap
getName() - Method in class net.cnri.repository.layered.LayeredDataElement
getName() - Method in class net.cnri.repository.memory.MemoryDataElement
getName() - Method in class net.cnri.repository.networked.NetworkedDataElement
getName() - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
getName() - Method in class net.cnri.repository.rest.RestDataElement
getName() - Method in class net.cnri.repository.search.SortField
getName() - Method in class net.cnri.repository.wrapper.DataElementWrapper
getNetworkedRepository(String, String, int, byte[], String, byte[]) - Static method in class net.cnri.repository.Repositories
getNewObjectPrefix(String, String) - Method in class net.cnri.apps.doserver.SetupHelper: Return the default configured prefix for identifiers that are auto-created by this server having the given identifers.
getNewObjectPrefixHandle(String, String) - Method in class net.cnri.apps.doserver.SetupHelper: Return the default configured prefix for identifiers that are auto-created by this server having the given identifers.
getNextObjectID() - Method in class net.cnri.apps.doserver.Main: Gets the next object ID in the sequence.
getNotes() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return any note that was in the index for this object
getNumEntities() - Method in class net.cnri.do_api.EntityMap: Get the number of known entities in the mapping/list
getNumericRange(String) - Method in class net.cnri.apps.dogui.controller.DOSearch: Return the numeric range value for an attribute.
getNumericRange() - Method in class net.cnri.apps.dogui.controller.DOSearch.SearchAttribute
getNumResults() - Method in class net.cnri.apps.dogui.view.SearchResultsView
getNumResults() - Method in class net.cnri.repository.rest.QueryResultsForJson
getObject(String) - Method in class net.cnri.apps.doserver.web.SearchableMap
getObjectAccessor(String) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Returns a StorageProxy for a different object in this Repository.
getObjectAccessor(String) - Method in interface net.cnri.dobj.StorageProxy: Returns a StorageProxy for a different object in this Repository.
getObjectID() - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Get the object identifier of the given object.
getObjectID() - Method in class net.cnri.do_api.DataElement
getObjectID() - Method in class net.cnri.do_api.DigitalObject: Returns the identifier for this digital object
getObjectID() - Method in class net.cnri.do_api.SearchResult
getObjectID() - Method in class net.cnri.dobj.DOMetadata: Returns the identifier for the object to which this metadata applies.
getObjectID() - Method in interface net.cnri.dobj.StorageProxy: Get the object identifier of the given object.
getObjectInfo(String, DOMetadata) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Returns any known metadata for the digital object with the given identifier.
getObjectInfo(String, DOMetadata) - Method in interface net.cnri.apps.doserver.Storage: Returns any known metadata for the digital object with the given identifier.
getObjectReference(String, String) - Method in class net.cnri.apps.dogui.view.AdminToolUI: Return a DigitalObject for the given object in the given repository.
getOccur() - Method in class net.cnri.repository.search.BooleanClause
getOperationHeaders() - Method in interface net.cnri.dobj.DOOperationContext: Returns the set of headers that were included with the operation request
getOperationHeaders() - Method in interface net.cnri.dobj.edo.EDOOperationContext: Returns the set of headers that were included with the operation request
getOperationHeaders() - Method in class net.cnri.repository.internal.InternalOperationContext
getOperationID() - Method in interface net.cnri.dobj.DOOperationContext: Returns the operation that the caller attempted to invoke.
getOperationID() - Method in interface net.cnri.dobj.edo.EDOOperationContext: Returns the operation that the caller attempted to invoke.
getOperationID() - Method in class net.cnri.repository.internal.InternalOperationContext
getOrCreateDataElement(String) - Method in class net.cnri.repository.AbstractDigitalObject
getOrCreateDataElement(String) - Method in class net.cnri.repository.android.EmbeddedDigitalObject
getOrCreateDataElement(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
getOrCreateDataElement(String) - Method in interface net.cnri.repository.DigitalObject: Returns the data element with the given name, creating it if it does not exist.
getOrCreateDataElement(String) - Method in class net.cnri.repository.memory.MemoryDigitalObject
getOrCreateDataElement(String) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
getOrCreateDigitalObject(String) - Method in class net.cnri.repository.AbstractRepository
getOrCreateDigitalObject(String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
getOrCreateDigitalObject(String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
getOrCreateDigitalObject(String) - Method in class net.cnri.repository.highlevel.HighLevelRepository
getOrCreateDigitalObject(String) - Method in class net.cnri.repository.memory.MemoryRepository
getOrCreateDigitalObject(String) - Method in interface net.cnri.repository.Repository: Returns the digital object with the given identifier from this repository, which is created if it does not exist.
getOrCreateDigitalObject(String) - Method in class net.cnri.repository.rest.RestRepository
getOrCreateDigitalObject(String) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
getOrCreateDigitalObject(String) - Method in class net.cnri.repository.wrapper.UnionRepository
getOrigRule() - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
getOutputStream() - Method in class net.cnri.apps.dogui.view.ConsolePanel
getOutputStream() - Method in class net.cnri.dobj.StreamPair
getOwner() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the owner of the object, or null if the owner is not known
getOwnerAttributes() - Method in class net.cnri.apps.doserver.Main
getPageOffSet() - Method in class net.cnri.repository.rest.QueryResultsForJson
getPageOffset() - Method in class net.cnri.repository.search.QueryParams
getPageSize() - Method in class net.cnri.repository.rest.QueryResultsForJson
getPageSize() - Method in class net.cnri.repository.search.QueryParams
getPAtts() - Method in class net.cnri.do_api.SearchResult.Element
getPendingSearches() - Method in class net.cnri.apps.dogui.view.SearchResultsView
getPhrases() - Method in class net.cnri.apps.dogui.controller.DOSearch: Return an iterator of String objects representing phrases
getPort() - Method in class net.cnri.dobj.DOServerInfo
getPosition() - Method in class net.cnri.repository.android.EmptyCursor
getPositionIncrementGap(String) - Method in class net.cnri.apps.doserver.operators.AlphanumericAnalyzer
getPreferredSize() - Method in class net.cnri.apps.dogui.view.HandleValueRenderer
getPriorLastSyncTime() - Method in class net.cnri.repository.syncing.SyncingRepository
getPrivateKey() - Method in class net.cnri.apps.doutilgui.AuthWindow
getPrivateKey(String) - Method in class net.cnri.dobj.DOSSLKeyManager
getProgress() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer
getProtocolMajorVersion() - Method in class net.cnri.dobj.DOConnection: Return the major protocol version of this connection if the connection handshake has already taken place.
getProtocolMinorVersion() - Method in class net.cnri.dobj.DOConnection: Return the minor protocol version of this connection if the connection handshake has already taken place.
getProtocolTimeout() - Method in class net.cnri.dobj.DOConnection
getPublicKey() - Method in class net.cnri.apps.doserver.Main: Returns the public key of this server
getPublicKey() - Method in class net.cnri.dobj.DOServerInfo
getPullQueries() - Method in class net.cnri.repository.syncing.SyncingConfig
getPushQueries() - Method in class net.cnri.repository.syncing.SyncingConfig
getQuery() - Method in class net.cnri.repository.android.ParcelableQuery
getQuery() - Method in class net.cnri.repository.search.BooleanClause
getQueryParser() - Method in class net.cnri.apps.doserver.operators.DefaultIndexBuilder: Returns a query parser to parse queries to this index.
getQueryParser() - Method in interface net.cnri.apps.doserver.operators.IndexBuilder: Returns a query parser to parse queries to this index.
getQueryParser() - Method in class net.cnri.apps.doserver.operators.JsonIndexBuilder
getQueryString() - Method in class net.cnri.repository.search.RawQuery
getQueryString() - Method in class net.cnri.repository.syncing.SyncingRepository.ModifiedSinceLastSyncQuery
getRandom() - Static method in class net.cnri.dobj.ConnectionEncryption: Return a singleton SecureRandom object.
getRawHandleValues(byte[], int[], byte[][]) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Return the pre-packaged values of the given handle that are either in the indexList or the typeList.
getRedirectStdErr() - Method in class net.cnri.apps.doserver.SetupHelper: Return whether or not the repository should redirect stderr to the errorlog file
getReferenceCount(String) - Method in class net.cnri.repository.ref.ReferenceCountingRepositoryWrapper
getRepoID(String) - Method in class net.cnri.apps.dogui.view.AdminToolUI: Get the ID of the repository with the given role
getRepoID() - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Get the repository identifier of the repository for the given object.
getRepoID() - Method in class net.cnri.do_api.SearchResult
getRepoID() - Method in interface net.cnri.dobj.StorageProxy: Get the repository identifier of the repository for the given object.
getRepository(String) - Method in class net.cnri.apps.dogui.view.AdminToolUI: Initialize (if needed) and return an authenticated connection to the repository with the given role.
getRepository() - Method in class net.cnri.do_api.DataElement
getRepository() - Method in class net.cnri.do_api.DigitalObject: Return the repository server through which this object is accessed
getRepository() - Method in class net.cnri.repository.android.EmbeddedDigitalObject
getRepository() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
getRepository() - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
getRepository() - Method in interface net.cnri.repository.DigitalObject: Returns the repository through which this digital object is being accessed.
getRepository() - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
getRepository() - Method in class net.cnri.repository.layered.LayeredDigitalObject
getRepository() - Method in class net.cnri.repository.memory.MemoryDigitalObject
getRepository() - Method in class net.cnri.repository.networked.NetworkedDigitalObject
getRepository() - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
getRepository() - Method in class net.cnri.repository.rest.RestDigitalObject
getRepository(ServletContext, HttpServletRequest) - Static method in class net.cnri.repository.rest.servlet.ServletUtil
getRepository() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
getRepositoryByID(String) - Method in class net.cnri.apps.dogui.view.AdminToolUI: Initialize (if needed) and return an authenticated connection to the repository with the given identifier.
getRepositoryID() - Method in class net.cnri.apps.dogui.controller.DOSearchResult
getResolver() - Static method in class net.cnri.dobj.DOClient
getResolver() - Static method in class net.cnri.dobj.DOConnection: Returns a singleton Resolver object.
getResource(String) - Method in class net.cnri.apps.doserver.ServerClassLoader
getResources(String) - Method in class net.cnri.apps.doserver.ServerClassLoader
getResult() - Method in class net.cnri.repository.util.Timer
getResultCount() - Method in class net.cnri.apps.dogui.view.SearchResultsList
getResults() - Method in class net.cnri.repository.rest.QueryResultsForJson
getReturnedFields() - Method in class net.cnri.repository.search.QueryParams
getSaltString() - Method in class net.cnri.repository.util.HashAndSalt
getScanner(long) - Method in class net.cnri.apps.doserver.txnlog.AbstractTransactionQueue: Deprecated.
Use #getCloseableScanner(long).
getScore() - Method in class net.cnri.do_api.SearchResult
getSearch() - Method in class net.cnri.apps.dogui.view.BasicSearchView: Return the current search parameters as a DOSearch
getSearch() - Method in class net.cnri.apps.dogui.view.DetailedSearchView: Return the current search parameters as a DOSearch
getSearchScore() - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
getSecretKey() - Method in class net.cnri.apps.doutilgui.AuthWindow
getSecureServerSocketFactory(PKAuthentication, PublicKey) - Static method in class net.cnri.dobj.DOServerConnection: This method returns an SSLServerSocketFactory that can be used to create SSLSockets that authenticate their side of the connection using handle public key authentication.
getServer(int) - Method in class net.cnri.dobj.DOServiceInfo
getServerAdmin() - Method in class net.cnri.apps.doserver.Main: Return the server administrator (ie super-user) who can perform any operation on any object.
getServerAliases(String, Principal[]) - Method in class net.cnri.dobj.DOSSLKeyManager
getServerCount() - Method in class net.cnri.dobj.DOServiceInfo
getServerDescription() - Method in class net.cnri.apps.doserver.SetupHelper
getServerID() - Method in class net.cnri.apps.doserver.Main: Returns the identifier for this server
getServerID() - Method in interface net.cnri.dobj.DOOperationContext: Returns the identity of this repository service
getServerID() - Method in class net.cnri.dobj.DOServerInfo: Returns a string that differentiates this server from the others in the same service.
getServerID() - Method in interface net.cnri.dobj.edo.EDOOperationContext: Returns the identity of this repository service
getServerID() - Method in class net.cnri.repository.internal.InternalOperationContext
getServerInfo() - Method in class net.cnri.dobj.DOClientConnection: If connected to a server, return the information for the server to which we are connected
getService() - Method in class net.cnri.dobj.DOServerInfo: Return the service that contains this server.
getServiceID() - Method in class net.cnri.dobj.DOClientConnection: If connected to a service by identifier, return that identifier
getServiceID() - Method in class net.cnri.dobj.DOServerInfo
getServiceID() - Method in class net.cnri.dobj.DOServiceInfo: Return the identifier that was resolved to get this service
getServiceInfo() - Method in class net.cnri.dobj.DOClientConnection: If connected to ta service, return the service information
getServiceRegistry() - Method in class net.cnri.apps.doserver.Main: Return the knowbot/operator registry in which operators and other services are registered
GetServletMetadata(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves the key metadata for a servlet
getShort(int) - Method in class net.cnri.repository.android.EmptyCursor
getSigAlgForKeyAlg(String) - Static method in class net.cnri.dobj.PKAuthentication
getSigner() - Method in class net.cnri.apps.doserver.Main: Returns the Signature object that can be used to sign data that is endorsed by this repository.
getSize() - Method in class net.cnri.do_api.DataElement: Gets the size in bytes of the data element, not including attributes
getSize() - Method in class net.cnri.do_api.DigitalObject: Gets the size in bytes of the data element, not including attributes
getSize(String, String) - Method in class net.cnri.repository.AbstractDirectRepository
getSize() - Method in class net.cnri.repository.AbstractFileDataElement
getSize() - Method in class net.cnri.repository.android.EmbeddedDataElement
getSize(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
getSize(String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
getSize() - Method in interface net.cnri.repository.DataElement: Returns the number of bytes of data in this data element.
getSize(String, String) - Method in interface net.cnri.repository.DirectRepository: Returns the number of bytes of data in this data element.
getSize() - Method in class net.cnri.repository.layered.LayeredDataElement
getSize(String, String) - Method in class net.cnri.repository.layered.LayeredRepository
getSize() - Method in class net.cnri.repository.memory.MemoryDataElement
getSize() - Method in class net.cnri.repository.networked.NetworkedDataElement
getSize() - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
getSize() - Method in class net.cnri.repository.rest.RestDataElement
getSize() - Method in class net.cnri.repository.wrapper.DataElementWrapper
getSize(String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
getSocket() - Method in class net.cnri.dobj.DOConnection: Returns the socket over which the connection is made
getSortFieldName(String) - Method in class net.cnri.apps.doserver.operators.DefaultIndexBuilder
getSortFieldName(String) - Method in interface net.cnri.apps.doserver.operators.IndexBuilder: Returns the name of the field that will be used for sorting.
getSortFields() - Method in class net.cnri.repository.search.QueryParams
getSourceActions(JComponent) - Method in class net.cnri.apps.dogui.view.DOTransferHandler
getSSLPort() - Method in class net.cnri.apps.doserver.SetupHelper
getState() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer
getStorage() - Method in class net.cnri.apps.doserver.Main: Returns a direct reference to the object storage
getStorage() - Method in interface net.cnri.dobj.DOOperationContext: Returns on object that allows operators to access the storage system for the current object.
getStorage() - Method in interface net.cnri.dobj.edo.EDOOperationContext: Returns on object that allows operators to access the storage system for the current object.
getStorage() - Method in class net.cnri.repository.internal.InternalOperationContext
getStoredPasswordForUser(String) - Method in class net.cnri.apps.doserver.Main: Get password stored in a local file rather than the handle system
getStr(String) - Method in class net.cnri.apps.dogui.view.AdminToolUI
getString(int) - Method in class net.cnri.repository.android.EmptyCursor
getStringArrayHeader(String, String[]) - Method in class net.cnri.dobj.HeaderSet: Returns the String array value for the last header with the given name.
getStringAtOffset(byte[], int) - Static method in class net.cnri.repository.bdbje.KeyUtil
getStringHeader(String, String) - Method in class net.cnri.dobj.HeaderSet: Returns the String value for the last header with the given name.
getSubArray(byte[], int, int) - Static method in class net.cnri.repository.bdbje.BdbUtil: Returns a new byte[] that is a subarray of a.
getSyncAllChanges() - Method in class net.cnri.repository.syncing.SyncingConfig
getSyncIntervalManager() - Method in class net.cnri.repository.syncing.SyncingConfig
getTag(String, String) - Method in class net.cnri.dobj.DOMetadata: Returns the value of the given tag.
getTagNames() - Method in class net.cnri.dobj.DOMetadata: Returns an iterator containing the names of all tags associated with this object.
getTargetObject() - Method in class net.cnri.apps.dogui.view.HDLAction
getTargetObjectID() - Method in interface net.cnri.dobj.DOOperationContext: Returns the object on which the caller is invoke the operation.
getTargetObjectID() - Method in interface net.cnri.dobj.edo.EDOOperationContext: Returns the object on which the caller is invoke the operation.
getTargetObjectID() - Method in class net.cnri.repository.internal.InternalOperationContext
getText() - Method in class net.cnri.do_api.SearchResult.Element
getTextValue(HandleValue) - Method in class net.cnri.apps.dogui.view.HandleValueRenderer: Return a text representation of the given handle value.
getTitle() - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Return the title of this item, or null if there is no title
getTop() - Method in class net.cnri.repository.layered.LayeredRepository
getTotalCount() - Method in class net.cnri.repository.ref.DigitalObjectReferenceCounter: Returns the total number of tracked references to all handles
getTotalMatches() - Method in class net.cnri.do_api.Repository.QueryResults
getTotalReferenceCount() - Method in class net.cnri.repository.layered.MigrationRepository: Returns the total number of references to bottom digital objects.
getTransactionHeaders(String) - Method in class net.cnri.apps.doserver.AuditLog: This will return the HeaderSet that was used when invoking the transaction with the given identifier.
getTransactionInput(String) - Method in class net.cnri.apps.doserver.AuditLog: This will return the stream of bytes that were used as input for the operation associated with the given transaction ID.
getTransactionOutput(String) - Method in class net.cnri.apps.doserver.AuditLog: This will return the stream of bytes that were generated as output from the operation associated with the given transaction ID.
getTransactionQueue() - Method in class net.cnri.apps.doserver.AbstractStorage
getTransactionQueue() - Method in interface net.cnri.apps.doserver.Storage: Returns the transaction queue set up by this storage
getTransactionTime(String) - Method in class net.cnri.apps.doserver.AuditLog: This will return the 64 bit value representing the date/time that the request with the given identifier occurred.
getTTLInWords(int, byte) - Method in class net.cnri.apps.dogui.view.HandleValueRenderer
getTxnQueue() - Method in class net.cnri.apps.doserver.Main: Returns the transaction queue for this server
getTxnTypeStr(byte) - Static method in class net.cnri.apps.doserver.ReplicationManager: Returns the parameter value corresponding to the given transaction type
getType() - Method in class net.cnri.repository.AbstractDataElement
getType() - Method in class net.cnri.repository.android.EmbeddedDataElement
getType(Uri) - Method in class net.cnri.repository.android.ProviderClientProxy
getType() - Method in class net.cnri.repository.bdbje.BdbjeDataElement
getType() - Method in interface net.cnri.repository.DataElement: Returns the MIME type of the given data.
getType() - Method in class net.cnri.repository.filesystem.FilesystemDataElement
getType() - Method in class net.cnri.repository.layered.LayeredDataElement
getType() - Method in class net.cnri.repository.memory.MemoryDataElement
getType() - Method in class net.cnri.repository.networked.NetworkedDataElement
getType() - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
getType() - Method in class net.cnri.repository.rest.RestDataElement
getType() - Method in class net.cnri.repository.rest.servlet.RequestPath
getType() - Method in class net.cnri.repository.wrapper.DataElementWrapper
getTypeID() - Method in class net.cnri.dobj.edo.EDOTypeInfo: Return the identifier for this type
GetTypeSignature(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves info for a type signature
getUI() - Method in class net.cnri.apps.dogui.controller.Main
getUniqueServerID() - Method in class net.cnri.apps.doserver.SetupHelper
getUniqueServiceID() - Method in class net.cnri.apps.doserver.SetupHelper
getUri() - Method in class net.cnri.repository.android.EmbeddedDataElement
getUserObject() - Method in class net.cnri.apps.dogui.view.AdminToolUI: Return the digital object that stores information for this user
getUtcFormat() - Static method in class net.cnri.repository.util.FastDateFormat: Returns a FastDateFormat which uses UTC.
getVal() - Method in class net.cnri.apps.doserver.HTTPConnectionHandler.AttributePair
getValue() - Method in class net.cnri.apps.dogui.controller.DOSearch.SearchAttribute
getValue() - Method in class net.cnri.dobj.HeaderItem
getValue() - Method in class net.cnri.repository.search.AttributeQuery
getValue() - Method in class net.cnri.repository.search.ElementAttributeQuery
getValue() - Method in class net.cnri.repository.util.Pair
GetVersion() - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieve the RAP version the repository is running
getWantsAllOnMoveCalls() - Method in class net.cnri.repository.android.EmptyCursor
getWindow() - Method in class net.cnri.repository.android.EmptyCursor
go() - Method in class net.cnri.apps.dogui.controller.CreateNewUser
go() - Method in class net.cnri.apps.dogui.view.AdminToolUI
GRANT_KEY_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
GRANTED_KEY_PREFIX - Static variable in class net.cnri.apps.doserver.operators.StandardOperations
GRANTED_KEY_PREFIX - Static variable in class net.cnri.do_api.DOKeyRing
GRANTED_KEY_PREFIX - Static variable in class net.cnri.knowbots.standardops.StandardOperations
grantKeyTo(DigitalObject, SecretKey) - Static method in class net.cnri.do_api.DOKeyRing: Encrypt and add the given secret key, which was used to encrypt an object, to the given recipient's keychain.
GREEN_LIGHT - Static variable in class net.cnri.apps.dogui.view.SyncStatusView
group - Variable in class net.cnri.cert.CertUtil.GroupChain
GROUP_BY_DATE - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
GROUP_BY_OWNER - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
GROUP_BY_TYPE - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
GROUP_INFO_ELEMENT - Static variable in class net.cnri.apps.dogui.view.ManageGroupsWindow
GROUP_OID - Static variable in class net.cnri.cert.CertUtil: OID for the group membership attribute for X.509 V2 Attribute Certificates
groupBy(int) - Method in class net.cnri.apps.dogui.view.SearchResultsList
GroupChain - Class in net.cnri.dobj.groups: A chain of subgroups, whose head is the super-most group.
GroupChain(String, GroupChain) - Constructor for class net.cnri.dobj.groups.GroupChain
GroupClient - Class in net.cnri.dobj.groups
GroupClient(DOClient) - Constructor for class net.cnri.dobj.groups.GroupClient
GroupUtil - Class in net.cnri.dobj.groups

H

HANDLE - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
HANDLE - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
HANDLE - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
HANDLE_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
handleOnlyColumns - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
handleRequest() - Method in class net.cnri.repository.rest.servlet.RequestHandler
HandleValueRenderer - Class in net.cnri.apps.dogui.view
HAS_TYPE_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
hasBeenKilled() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer: Return whether or not this synchronizer has been killed.
HashAndSalt - Class in net.cnri.repository.util
HashAndSalt(String) - Constructor for class net.cnri.repository.util.HashAndSalt
HashAndSalt(String, String) - Constructor for class net.cnri.repository.util.HashAndSalt
hashCode() - Method in class net.cnri.dobj.HeaderItem
hashCode() - Method in class net.cnri.dobj.HeaderSet
hashCode() - Method in class net.cnri.repository.AbstractDigitalObject
hashCode() - Method in class net.cnri.repository.util.Pair
HashDirectoryStorage - Class in net.cnri.apps.doserver: HashDirectoryStorage stores digital objects and associated data elements using the file system.
HashDirectoryStorage() - Constructor for class net.cnri.apps.doserver.HashDirectoryStorage
hasHeader(String) - Method in class net.cnri.dobj.HeaderSet: Returns true iff this HeaderSet contains a header with the given name.
HashServlet - Class in net.cnri.apps.doserver: Created by IntelliJ IDEA.
HashServlet(Main, ExecutorService, HTTPConnectionHandler) - Constructor for class net.cnri.apps.doserver.HashServlet
hasID(String) - Method in class net.cnri.do_api.EntityMap.Entity: Returns true if this entity has the given ID
hasMoreElements() - Method in class net.cnri.apps.doserver.txnlog.ConcatenatedTransactionQueue.QueueScanner
hasMoreElements() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue.QueueScanner
hasMoreElements() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB.QueueScanner
hasNext() - Method in class net.cnri.repository.android.CursorIteratorImpl
hasNext() - Method in class net.cnri.repository.search.QueryResults
hasNext() - Method in class net.cnri.repository.util.AbstractCloseableIterator: Returns true if the iteration has more elements.
hasNext() - Method in class net.cnri.repository.util.CloseableIteratorFromIterator
hasParams() - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
hasStr(String) - Method in class net.cnri.apps.dogui.view.AdminToolUI
haveNA(byte[]) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Returns true if this server is responsible for the given naming authority.
HDLAction - Class in net.cnri.apps.dogui.view
HDLAction(AdminToolUI, String, ActionListener) - Constructor for class net.cnri.apps.dogui.view.HDLAction
HDLAction(AdminToolUI, String, String) - Constructor for class net.cnri.apps.dogui.view.HDLAction
HDLAction(AdminToolUI, String, String, ActionListener) - Constructor for class net.cnri.apps.dogui.view.HDLAction
HDLCalculatedStorage - Class in net.cnri.apps.hdlstorage: HDLCalculatedStorage is a HandleStorage module that can return handle values for handles that don't exist in the handle database based on a template for handles with a certain prefix.
HDLCalculatedStorage() - Constructor for class net.cnri.apps.hdlstorage.HDLCalculatedStorage
HeaderItem - Class in net.cnri.dobj
HeaderSet - Class in net.cnri.dobj: HeaderSet objects manage, parse, and format a set of key-value pairs that are used with DOConnection messages.
HeaderSet(String) - Constructor for class net.cnri.dobj.HeaderSet: Construct a HeaderSet with the given message type
HeaderSet() - Constructor for class net.cnri.dobj.HeaderSet: Construct a HeaderSet with the given message type
HeaderSet(HeaderSet) - Constructor for class net.cnri.dobj.HeaderSet: Copy constructor
HeaderSetPrefixMap - Class in net.cnri.repository.networked
HeaderSetPrefixMap(HeaderSet, String) - Constructor for class net.cnri.repository.networked.HeaderSetPrefixMap
hideAddressBook() - Method in class net.cnri.apps.dogui.view.AdminToolUI
hideManageGroupsWindow() - Method in class net.cnri.apps.dogui.view.AdminToolUI
HighLevelDigitalObject - Class in net.cnri.repository.highlevel
HighLevelDigitalObject(RepositoryWrapper, DigitalObject) - Constructor for class net.cnri.repository.highlevel.HighLevelDigitalObject
HighLevelRepository - Class in net.cnri.repository.highlevel
HighLevelRepository(Repository) - Constructor for class net.cnri.repository.highlevel.HighLevelRepository
HOME_REPO_ATT - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
HTML - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
HTTP_PORT_KEY - Static variable in class net.cnri.apps.doserver.Main
HttpClientUtil - Class in net.cnri.repository.util
HttpClientUtil() - Constructor for class net.cnri.repository.util.HttpClientUtil
HTTPConnectionHandler - Class in net.cnri.apps.doserver: HTTPConnectionHandler objects run in their own thread and are responsible for managing a single connection to the server.
HTTPConnectionHandler.AttributePair - Class in net.cnri.apps.doserver
HTTPConnectionHandler.AttributePair(String, String) - Constructor for class net.cnri.apps.doserver.HTTPConnectionHandler.AttributePair
HTTPConnectionHandler.ElementType - Class in net.cnri.apps.doserver
HTTPConnectionHandler.ElementType(String) - Constructor for class net.cnri.apps.doserver.HTTPConnectionHandler.ElementType
HTTPConnectionHandler.HTTPRepositoryInterface - Class in net.cnri.apps.doserver
HTTPConnectionHandler.HTTPRepositoryInterface(Main, ExecutorService, HttpServletRequest, String) - Constructor for class net.cnri.apps.doserver.HTTPConnectionHandler.HTTPRepositoryInterface
HTTPS_KEY_STORE_FILE_NAMES - Static variable in class net.cnri.apps.doserver.Main
HTTPS_PORT_KEY - Static variable in class net.cnri.apps.doserver.Main

I

iconForMimeType(String) - Static method in class net.cnri.apps.dogui.view.SearchResultsList
ID_ATTRIBUTE - Static variable in class net.cnri.do_api.EntityMap
ID_HANDLE_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
ID_NAME_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ElementColumns
ID_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ElementColumns
ID_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
importData(JComponent, Transferable) - Method in class net.cnri.apps.dogui.view.DOTransferHandler: Import the indicated transferable into the digital object
importFiles(List) - Method in class net.cnri.apps.dogui.view.ShowObjectWindow
in - Variable in class net.cnri.apps.doserver.SetupHelper
INBOX - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
incrementAndGet(T) - Method in class net.cnri.repository.util.ConcurrentCountingHashMap
INDEX_BUILDER_CLASS_KEY - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
INDEX_UP_TO_DATE_ID - Static variable in interface net.cnri.dobj.DOConstants
IndexBuilder - Interface in net.cnri.apps.doserver.operators
INDEXES_ATT - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
indexMe(String) - Method in class net.cnri.apps.dogui.controller.RepoRunner: This is called by other RepoRunners in order to notify them that they want to be indexed
indexOf(byte[], byte) - Static method in class net.cnri.repository.bdbje.BdbUtil
indexOfInListAttribute(String, String) - Method in class net.cnri.repository.highlevel.HighLevelDigitalObject: Treats the value of the attribute as a new line separated list of strings.
IndexSearcherManager - Class in net.cnri.apps.doserver.operators
IndexSearcherManager(DirectoryReader) - Constructor for class net.cnri.apps.doserver.operators.IndexSearcherManager
IndexSearcherManager.LockTrackingIndexSearcherWrapper - Class in net.cnri.apps.doserver.operators
IndexTest - Class in net.cnri.apps.test: Main class for a simple GUI that individuals can use to populate the border safe system
IndexTest(PKAuthentication) - Constructor for class net.cnri.apps.test.IndexTest
INFO - Static variable in class net.cnri.apps.dogui.view.DOImages
init(Main) - Method in class net.cnri.apps.doserver.operators.DefaultIndexBuilder
init(Main) - Method in interface net.cnri.apps.doserver.operators.IndexBuilder: Initialize the index builder and notify it of its containing server Main instance.
init(Main) - Method in class net.cnri.apps.doserver.operators.JsonIndexBuilder
init(StreamTable) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Initialize the JDB handle database with the given configuration.
initialize() - Method in class net.cnri.dobj.PKAuthentication
initParameters(HeaderSet, HeaderSet) - Method in class net.cnri.dobj.ConnectionEncryption: Set up the encryption mechanism and put the parameters into the given HeaderSet so that they can be communicated to the other side.
initParameters(HeaderSet, HeaderSet) - Method in class net.cnri.dobj.DESEncryption: Set up the encryption mechanism and put the parameters into the given HeaderSet so that they can be communicated to the other side.
initParameters(HeaderSet, HeaderSet) - Method in class net.cnri.dobj.GenericEncryption: Set up the encryption mechanism and put the parameters into the given HeaderSet so that they can be communicated to the other side.
initTransactionQueue(File) - Method in class net.cnri.apps.doserver.AbstractStorage
initTransactionQueue(File) - Method in interface net.cnri.apps.doserver.Storage: Initialize the transaction queue in the given directory---server calls this after initializing storage
initWithDirectory(Main, File) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Initializes the storage for use with server based in the given storage directory.
initWithDirectory(Main, File) - Method in interface net.cnri.apps.doserver.Storage: Initializes the storage for use with server based in the given storage directory.
INJECT_KNOWBOT_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
INSECURE_SEARCH_KEY - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
insert(Uri, ContentValues) - Method in class net.cnri.repository.android.ProviderClientProxy
INTERNAL_CREATED - Static variable in class net.cnri.repository.Repositories
INTERNAL_DELETE_LOCAL_AFTER_SYNC - Static variable in class net.cnri.repository.syncing.SyncingRepository
INTERNAL_ERROR - Static variable in exception net.cnri.dobj.DOException
INTERNAL_MODIFIED - Static variable in class net.cnri.repository.Repositories
INTERNAL_SYNC - Static variable in class net.cnri.repository.syncing.SyncingRepository
InternalException - Exception in net.cnri.repository: Exception thrown by a Repository operation when an unexpected error has occurred.
InternalException(Throwable) - Constructor for exception net.cnri.repository.InternalException
InternalException(String) - Constructor for exception net.cnri.repository.InternalException
InternalException(String, Throwable) - Constructor for exception net.cnri.repository.InternalException
InternalOperationContext - Class in net.cnri.repository.internal: An context for executing an operation in an InternalRepository.
InternalOperationContext(Main, Caller, String, String, HeaderSet) - Constructor for class net.cnri.repository.internal.InternalOperationContext: Constructs this context.
InternalRepository - Class in net.cnri.apps.doserver: This object provides high level access to a digital object repository from within the repository.
InternalRepository(Main) - Constructor for class net.cnri.apps.doserver.InternalRepository: Deprecated.
InternalRepository(Main, ExecutorService) - Constructor for class net.cnri.apps.doserver.InternalRepository: Constructor for a repository that interfaces an object that provides an interface to the with the given authentication information
InternalRepository - Class in net.cnri.repository.internal: A repository interface to the server we are running within.
InternalRepository(Main, Caller) - Constructor for class net.cnri.repository.internal.InternalRepository
InternalRepository(Main, Caller, ExecutorService) - Constructor for class net.cnri.repository.internal.InternalRepository
InternalRepository(Main, Caller, ExecutorService, boolean) - Constructor for class net.cnri.repository.internal.InternalRepository
intersection(List<Set<String>>) - Static method in class net.cnri.repository.util.CollectionUtil
intersection(Set<String>, Set<String>) - Static method in class net.cnri.repository.util.CollectionUtil
IS_PART_OF_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
isAfterLast() - Method in class net.cnri.repository.android.EmptyCursor
isAttributeKey(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
isAutomaticRepoSelected() - Method in class net.cnri.apps.dogui.view.MainWindow
isBeforeFirst() - Method in class net.cnri.repository.android.EmptyCursor
isClosed() - Method in class net.cnri.repository.android.EmptyCursor
isConcatenatedQueueNeeded(File) - Static method in class net.cnri.apps.doserver.AbstractStorage
isDataPresent() - Method in class net.cnri.repository.util.RepositoryJSONSerializer.DOView.ElementView
isDataPresent() - Method in class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView.ElementView
isElementAttributekey(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
isElementKey(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
isEmpty() - Method in class net.cnri.repository.highlevel.AttributeMap
isEmpty() - Method in class net.cnri.repository.networked.MapFromHeaderSet
isEncrypted() - Method in class net.cnri.dobj.DOConnection: Returns true iff this connection is encrypted in some way.
isFirst() - Method in class net.cnri.repository.android.EmptyCursor
isHandleKey(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
isKeyAttributeOfThisElement(byte[]) - Method in class net.cnri.repository.bdbje.BdbjeDataElement: Is the given key an attribute on this element.
isLast() - Method in class net.cnri.repository.android.EmptyCursor
isListening() - Method in class net.cnri.apps.doserver.Main
isMacOSX - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
isMore() - Method in class net.cnri.do_api.Repository.QueryResults
isMore() - Method in class net.cnri.repository.search.QueryResults
isNull(int) - Method in class net.cnri.repository.android.EmptyCursor
ISO8601_MS - Static variable in class net.cnri.repository.util.FastDateFormat.FormatSpec: new FormatSpec("-","T",":",":",".",true,true);, e.g.
ISO8601_NO_MS - Static variable in class net.cnri.repository.util.FastDateFormat.FormatSpec: new FormatSpec("-","T",":",":",".",false,true);, e.g.
isOpen() - Method in class net.cnri.dobj.DOConnection: Returns true iff the connection is still open
isQueuedObject(String) - Method in class net.cnri.repository.android.ClientRepository
isRange() - Method in class net.cnri.apps.dogui.controller.DOSearch.SearchAttribute
isReverse() - Method in class net.cnri.repository.search.SortField
isRunning() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer: Return whether or not the worker thread has actually completed
isRunning() - Method in class net.cnri.apps.dogui.controller.RepoRunner: Returns true if the server is running and responding to requests
isThisServer(String) - Method in class net.cnri.apps.doserver.Main: Returns true if the given DOServerInfo object refers to this server.
isTxnLogMigrationNeeded(File) - Static method in class net.cnri.apps.doserver.txnlog.TxnLogMigrationTool: Tests to see if you have .q files in your txns folder
iterator() - Method in class net.cnri.dobj.HeaderSet: Returns an iterator that returns each HeaderItem
IteratorIncludingExcludingSets<U> - Class in net.cnri.repository.util
IteratorIncludingExcludingSets(CloseableIterator<U>, Set<U>, Set<U>) - Constructor for class net.cnri.repository.util.IteratorIncludingExcludingSets

J

JLinkLabel - Class in net.cnri.apps.dogui.view.util: A JLinkLabel is a component that resembles and behaves like a hypertext link
JLinkLabel(String, Object, int) - Constructor for class net.cnri.apps.dogui.view.util.JLinkLabel
JLinkListener - Interface in net.cnri.apps.dogui.view.util: Listener to catch clicks on JLinkLabel hypertext-style links
JsonIndexBuilder - Class in net.cnri.apps.doserver.operators
JsonIndexBuilder() - Constructor for class net.cnri.apps.doserver.operators.JsonIndexBuilder
JythonMain - Class in net.cnri.apps.dojython: This is a simple utility to invoke an operation on an object from the command-line.
JythonMain() - Constructor for class net.cnri.apps.dojython.JythonMain

K

KEY_ALG_ATTRIBUTE - Static variable in class net.cnri.do_api.DOKeyRing
KEY_ELEMENT_PREFIX - Static variable in class net.cnri.apps.dogui.view.ShowObjectWindow
KEY_ID_ATTRIBUTE - Static variable in class net.cnri.do_api.DOKeyRing
KeyGenerator - Class in net.cnri.apps.cmdline: This class is run from the command-line to generate authentication keys
KeyGenerator() - Constructor for class net.cnri.apps.cmdline.KeyGenerator
KEYRING_ELEMENT_ID - Static variable in class net.cnri.do_api.DOKeyRing
keySet() - Method in class net.cnri.repository.highlevel.AttributeMap
keySet() - Method in class net.cnri.repository.networked.MapFromHeaderSet
keyToString(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
KeyUtil - Class in net.cnri.repository.bdbje
KeyUtil() - Constructor for class net.cnri.repository.bdbje.KeyUtil
kill() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer: Tell the worker flag that it is time to finish up
KNOWN_SERVERS_FILENAME - Static variable in class net.cnri.dobj.config.DOConfiguration

L

landingZoneSync() - Method in class net.cnri.repository.android.ClientRepository
LANGUAGE_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
LAST_CREATOR_PREF - Static variable in class net.cnri.apps.dogui.view.DetailedSearchView
LayeredDataElement - Class in net.cnri.repository.layered
LayeredDataElement(LayeredDigitalObject, String, DataElement, DataElement, ExecutorService) - Constructor for class net.cnri.repository.layered.LayeredDataElement
LayeredDigitalObject - Class in net.cnri.repository.layered
LayeredDigitalObject(LayeredRepository, String, DigitalObject, DigitalObject, ExecutorService) - Constructor for class net.cnri.repository.layered.LayeredDigitalObject
LayeredRepository - Class in net.cnri.repository.layered: The LayeredRepository is composed of two other repositories, a top and a bottom.
LayeredRepository(Repository, Repository) - Constructor for class net.cnri.repository.layered.LayeredRepository
LayeredRepository(Repository, Repository, boolean) - Constructor for class net.cnri.repository.layered.LayeredRepository
lift(String) - Method in class net.cnri.repository.layered.LayeredRepository
LimitedInputStream - Class in net.cnri.repository.util
LimitedInputStream(InputStream, long, long) - Constructor for class net.cnri.repository.util.LimitedInputStream
linkActivated(Object, InputEvent) - Method in class net.cnri.apps.dogui.view.ShowObjectWindow: Process a click on a link
linkActivated(Object, InputEvent) - Method in interface net.cnri.apps.dogui.view.util.JLinkListener
LIST_DATA_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
LIST_DELEGATORS_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
LIST_OBJECTS_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
LIST_OPERATIONS_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
LIST_TYPES_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
ListAttachments(String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: List attachments for a digital object disseminator
listAttributes() - Method in class net.cnri.do_api.DataElement: Return the list of attribute names for this object
listAttributes() - Method in class net.cnri.do_api.DigitalObject: Return the list of attribute names for this object
listAttributes() - Method in class net.cnri.repository.AbstractDataElement
listAttributes() - Method in class net.cnri.repository.AbstractDigitalObject
listAttributes(String, String) - Method in class net.cnri.repository.AbstractDirectRepository
listAttributes() - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
listAttributes() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
listAttributes(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
listAttributes() - Method in class net.cnri.repository.bdbje.BdbjeDataElement
listAttributes() - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
listAttributes(String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
listAttributes() - Method in interface net.cnri.repository.DataElement: Returns a CloseableIterator view of the attributes of the data element.
listAttributes() - Method in interface net.cnri.repository.DigitalObject: Returns a CloseableIterator view of the attributes of the digital object.
listAttributes(String, String) - Method in interface net.cnri.repository.DirectRepository: Returns a CloseableIterator view of the attributes of the digital object or data element.
listAttributes() - Method in class net.cnri.repository.filesystem.FilesystemDataElement
listAttributes() - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
listAttributes() - Method in class net.cnri.repository.layered.LayeredDataElement
listAttributes() - Method in class net.cnri.repository.layered.LayeredDigitalObject
listAttributes(String, String) - Method in class net.cnri.repository.layered.LayeredRepository
listAttributes() - Method in class net.cnri.repository.memory.MemoryDataElement
listAttributes() - Method in class net.cnri.repository.memory.MemoryDigitalObject
listAttributes() - Method in class net.cnri.repository.networked.NetworkedDataElement
listAttributes() - Method in class net.cnri.repository.networked.NetworkedDigitalObject
listAttributes() - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
listAttributes() - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
listAttributes() - Method in class net.cnri.repository.rest.RestDataElement
listAttributes() - Method in class net.cnri.repository.rest.RestDigitalObject
listAttributes() - Method in class net.cnri.repository.wrapper.DataElementWrapper
listAttributes() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
listAttributes(String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
listDataElementNames() - Method in class net.cnri.repository.AbstractDigitalObject
listDataElementNames(String) - Method in class net.cnri.repository.AbstractDirectRepository
listDataElementNames() - Method in class net.cnri.repository.android.EmbeddedDigitalObject
listDataElementNames() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
listDataElementNames(String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
listDataElementNames() - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
listDataElementNames(String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
listDataElementNames() - Method in interface net.cnri.repository.DigitalObject: Provides a CloseableIterator view of the names of the data elements in this digital object.
listDataElementNames(String) - Method in interface net.cnri.repository.DirectRepository: Provides a CloseableIterator view of the names of the data elements in this digital object.
listDataElementNames() - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
listDataElementNames() - Method in class net.cnri.repository.layered.LayeredDigitalObject
listDataElementNames(String) - Method in class net.cnri.repository.layered.LayeredRepository
listDataElementNames() - Method in class net.cnri.repository.memory.MemoryDigitalObject
listDataElementNames() - Method in class net.cnri.repository.networked.NetworkedDigitalObject
listDataElementNames() - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
listDataElementNames() - Method in class net.cnri.repository.rest.RestDigitalObject
listDataElementNames() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
listDataElementNames(String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
listDataElements() - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Returns a list of the data elements associated with the current object.
listDataElements(String) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Returns an Enumeration (so that not all elements have to be loaded at once)
listDataElements(String) - Method in interface net.cnri.apps.doserver.Storage: Returns an Enumeration (so that not all elements have to be loaded at once)
listDataElements() - Method in class net.cnri.do_api.DigitalObject: List the elements in this digital object
listDataElements() - Method in interface net.cnri.dobj.StorageProxy: Returns a list of the data elements associated with the current object.
listDataElements() - Method in class net.cnri.repository.AbstractDigitalObject
listDataElements() - Method in class net.cnri.repository.android.EmbeddedDigitalObject
listDataElements() - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
listDataElements() - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
listDataElements() - Method in interface net.cnri.repository.DigitalObject: Provides a CloseableIterator view of the data elements in this digital object.
listDataElements() - Method in class net.cnri.repository.layered.LayeredDigitalObject
listDataElements() - Method in class net.cnri.repository.memory.MemoryDigitalObject
listDataElements() - Method in class net.cnri.repository.networked.NetworkedDigitalObject
listDataElements() - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
listDataElements() - Method in class net.cnri.repository.rest.RestDigitalObject
listDataElements() - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
ListDataStreams(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves the data streams for a digital object
listDelegators(DOClient, String, String, String) - Static method in class net.cnri.dobj.delegation.DelegationUtil: List the entities delegating to the given entity, for example the groups of a member, or the supergroups of a group.
listDelegators(DOClient, String, String, String) - Static method in class net.cnri.dobj.groups.GroupUtil: List the entities delegating to the given entity, for example the groups of a member, or the supergroups of a group.
ListDigitalObjectIDs(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieve a list of digital objects stored in the repository
ListDisseminators(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieves the disseminators for a digital object
ListElementDelegationOperations - Class in net.cnri.apps.doserver.operators
ListElementDelegationOperations() - Constructor for class net.cnri.apps.doserver.operators.ListElementDelegationOperations
LISTEN_IP_KEY - Static variable in class net.cnri.apps.doserver.Main
listHandles() - Method in class net.cnri.repository.AbstractRepository
listHandles() - Method in class net.cnri.repository.android.EmbeddedRepository
listHandles() - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
listHandles() - Method in class net.cnri.repository.bdbje.BdbjeRepository
listHandles() - Method in class net.cnri.repository.filesystem.FilesystemRepository
listHandles() - Method in class net.cnri.repository.layered.LayeredRepository
listHandles() - Method in class net.cnri.repository.memory.MemoryRepository
listHandles() - Method in class net.cnri.repository.networked.NetworkedRepository
listHandles() - Method in interface net.cnri.repository.Repository: Provides a CloseableIterator view of the identifiers for digital objects accessible through this repository.
listHandles() - Method in class net.cnri.repository.rest.RestRepository
listHandles() - Method in class net.cnri.repository.wrapper.RepositoryWrapper
listHandles() - Method in class net.cnri.repository.wrapper.UnionRepository
listObjects() - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Returns an Enumeration of all of the objects in the repository.
listObjects() - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Returns an Enumeration of all of the objects in the repository.
listObjects() - Method in interface net.cnri.apps.doserver.Storage: Returns an Enumeration of all of the object IDs in the repository.
listObjects() - Method in class net.cnri.do_api.Repository: Return an iterator of object IDs that are contained in this repository.
listObjects() - Method in interface net.cnri.dobj.StorageProxy: Returns an Enumeration of all of the objects in the repository.
listObjects() - Method in class net.cnri.repository.AbstractRepository
listObjects() - Method in class net.cnri.repository.android.EmbeddedRepository
listObjects() - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
listObjects() - Method in class net.cnri.repository.bdbje.BdbjeRepository
listObjects() - Method in class net.cnri.repository.filesystem.FilesystemRepository
listObjects() - Method in class net.cnri.repository.memory.MemoryRepository
listObjects() - Method in class net.cnri.repository.networked.NetworkedRepository
listObjects() - Method in interface net.cnri.repository.Repository: Provides a CloseableIterator view of the digital objects accessible through this repository.
listObjects() - Method in class net.cnri.repository.rest.RestRepository
listObjects() - Method in class net.cnri.repository.wrapper.RepositoryWrapper
listObjects() - Method in class net.cnri.repository.wrapper.UnionRepository
listOperationIDs(EDOOperationContext) - Method in class net.cnri.dobj.edo.EDOOperator: Returns a list of operations that this operator can perform on the object identified by the DOOperationContext parameter.
listOperations(DOOperationContext) - Method in class net.cnri.apps.doserver.AuditHookImpl: Returns a list of operations that this operator can perform on the object identified by the DOOperationContext parameter.
listOperations(DOOperationContext) - Method in class net.cnri.apps.doserver.ExternalInterface: Returns a list of operations that this operator can perform on the object identified by the DOOperationContext parameter.
listOperations(DOOperationContext) - Method in class net.cnri.apps.doserver.operators.AbstractDelegationOperations
listOperations(DOOperationContext) - Method in class net.cnri.apps.doserver.operators.LuceneIndexer: Returns a list of operations that this operator can perform on the object identified by the DOOperationContext parameter.
listOperations(DOOperationContext) - Method in class net.cnri.apps.doserver.operators.StandardOperations: Returns a list of operations that this operator can perform on the object identified by the DOOperationContext parameter.
listOperations(DOOperationContext) - Method in class net.cnri.apps.doserver.ReplicationOperator: Returns a list of operations that this operator can perform on the object identified by the DOOperationContext parameter.
listOperations(String, String) - Method in class net.cnri.dobj.DOClient: List the operations that can be performed on the given object at the specified repository.
listOperations(DOOperationContext) - Method in interface net.cnri.dobj.DOOperation: Returns a list of operations that this operator can perform on the object identified by the DOOperationContext parameter.
listOperations(DOOperationContext) - Method in class net.cnri.knowbots.matrix.MatrixOps: Returns the list of operations that this knowbot can perform in the given context.
listOperations(DOOperationContext) - Method in class net.cnri.knowbots.standardops.StandardOperations: Returns a list of operations that this operator can perform on the object identified by the DOOperationContext parameter.
ListPolicies(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieve a list of policy disseminator ids for a DO
listQueuedHandles(Query) - Method in class net.cnri.repository.android.ClientRepository
ListRepositoryPolicies() - Method in class net.cnri.dobj.emcompat.ServerConnection: Retrieve a list of policy disseminator ids for the repository
listTransactionsIDs(String, String, String, long, long, Writer) - Method in class net.cnri.apps.doserver.AuditLog: This will write a \n-delimited list of transaction IDs for which the given operation was performed on the given object.
loadConfiguration() - Method in class net.cnri.apps.doserver.Configuration
loadDOViewIntoRepository(RepositoryJSONSerializer.DOView, Repository) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
loadDOViewIntoRepository(RepositoryJsonSerializerV2.DOView, Repository) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
loadDOViewsIntoRepository(List<RepositoryJSONSerializer.DOView>, Repository) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
loadDOViewsIntoRepository(List<RepositoryJsonSerializerV2.DOView>, Repository) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
loadFromObject(DigitalObject) - Method in class net.cnri.do_api.EntityMap: Load the entity map from the given DigitalObject
loadJsonIntoDigitalObject(String, DigitalObject) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
loadJsonIntoDigitalObject(String, DigitalObject) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
loadKeys() - Method in class net.cnri.do_api.DOKeyRing: Loads the user's keychain from their digital object, consolidating any granted keys into the main keyring
loadRepositoryFromURL(Repository, String) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer: Loads a Repository from a URL given that the URL returns a correctly formatted JSON string.
loadRepositoryFromURL(Repository, String) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2: Loads a Repository from a URL given that the URL returns a correctly formatted JSON string.
loadSettingsFromUser(DigitalObject) - Method in class net.cnri.apps.dogui.view.UserInfoPanel
LoadTestViaAPI - Class in net.cnri.apps.test: Class used for testing the load capacity of a repository using the high level digital object API.
LoadTestViaAPI(Repository, String, File) - Constructor for class net.cnri.apps.test.LoadTestViaAPI
LOCAL_CONFIG_HANDLE - Static variable in class net.cnri.repository.syncing.SyncingRepository
LOCAL_INDEX - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
lock(boolean) - Method in class net.cnri.repository.filesystem.FilesystemRepository
lock(String) - Method in class net.cnri.repository.syncing.SyncingRepository
log(String) - Method in class net.cnri.apps.doserver.ServerLog: Write a message to the log
LOG_ACCESSES_KEY - Static variable in class net.cnri.apps.doserver.Main
LOG_BUFFER_SIZE - Static variable in class net.cnri.apps.doserver.ServerLog
LOG_SAVE_INTERVAL_KEY - Static variable in class net.cnri.apps.doserver.Main
LogbackContextInitializer - Class in net.cnri.apps.doserver
LogbackContextInitializer() - Constructor for class net.cnri.apps.doserver.LogbackContextInitializer
LoggerOutputStream - Class in net.cnri.apps.doserver
LoggerOutputStream() - Constructor for class net.cnri.apps.doserver.LoggerOutputStream
looksLikeID(String) - Static method in class net.cnri.apps.dogui.view.MainWindow: Returns true if the given string looks like a handle
lookupCode(int) - Static method in exception net.cnri.dobj.DOException
LUCENE_CONFIG_ELEMENT - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
LuceneIndexer - Class in net.cnri.apps.doserver.operators: Operator that provides text indexing capabilities using the Lucene search engine.
LuceneIndexer(Main) - Constructor for class net.cnri.apps.doserver.operators.LuceneIndexer

M

main(String[]) - Static method in class net.cnri.apps.auditgui.AuditWindow
main(String[]) - Static method in class net.cnri.apps.cmdline.CertGenerator
main(String[]) - Static method in class net.cnri.apps.cmdline.KeyGenerator
Main - Class in net.cnri.apps.cmdline: This is a simple utility to invoke an operation on an object from the command-line.
Main() - Constructor for class net.cnri.apps.cmdline.Main
main(String[]) - Static method in class net.cnri.apps.cmdline.Main
main(String[]) - Static method in class net.cnri.apps.doclient.StartWindow
main(String[]) - Static method in class net.cnri.apps.dogui.controller.CreateNewUser
Main - Class in net.cnri.apps.dogui.controller
Main() - Constructor for class net.cnri.apps.dogui.controller.Main
main(String[]) - Static method in class net.cnri.apps.dogui.controller.Main
main(String[]) - Static method in class net.cnri.apps.dojython.JythonMain
main(String[]) - Static method in class net.cnri.apps.doserver.HashDirectoryStorage
Main - Class in net.cnri.apps.doserver: This class runs a server object that accepts and handles incoming requests for operations on digital objects.
Main(PrivateKey, File, SetupHelper) - Constructor for class net.cnri.apps.doserver.Main
main(String[]) - Static method in class net.cnri.apps.doserver.Main
main(String[]) - Static method in class net.cnri.apps.doserver.RESTServlet
main(String[]) - Static method in class net.cnri.apps.doserver.txnlog.TxnLogMigrationTool
Main - Class in net.cnri.apps.doutilgui: Main class for a simple GUI that provides raw access to DO operations
Main() - Constructor for class net.cnri.apps.doutilgui.Main
main(String[]) - Static method in class net.cnri.apps.doutilgui.Main
main(String[]) - Static method in class net.cnri.apps.sample.DOExample
main(String[]) - Static method in class net.cnri.apps.test.DOAPISample
main(String[]) - Static method in class net.cnri.apps.test.IndexTest
main(String[]) - Static method in class net.cnri.apps.test.LoadTestViaAPI
main(String[]) - Static method in class net.cnri.apps.test.TestMM
main(String[]) - Static method in class net.cnri.cert.CertUtil
main(String[]) - Static method in class net.cnri.repository.util.FastDateFormat
MainWindow - Class in net.cnri.apps.dogui.view
MainWindow(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.MainWindow
MainWindow.DragMouseAdapter - Class in net.cnri.apps.dogui.view
MainWindow.DragMouseAdapter() - Constructor for class net.cnri.apps.dogui.view.MainWindow.DragMouseAdapter
makeCamelCase(String) - Static method in class net.cnri.apps.doserver.web.MetadataUtil
makeIndeterminateProgressBar() - Method in class net.cnri.apps.dogui.view.DOViewPanel
ManageGroupsWindow - Class in net.cnri.apps.dogui.view
ManageGroupsWindow(JFrame, AdminToolUI, DigitalObject) - Constructor for class net.cnri.apps.dogui.view.ManageGroupsWindow
MapFromHeaderSet - Class in net.cnri.repository.networked
MapFromHeaderSet(HeaderSet) - Constructor for class net.cnri.repository.networked.MapFromHeaderSet
MappingCloseableIteratorWrapper<From,To> - Class in net.cnri.repository.util: CloseableIterator which returns the result of applying a specified function to the objects returned by a given CloseableIterator.
MappingCloseableIteratorWrapper(CloseableIterator<From>) - Constructor for class net.cnri.repository.util.MappingCloseableIteratorWrapper
mark(int) - Method in class net.cnri.repository.util.LimitedInputStream
MatchAllObjectsQuery - Class in net.cnri.repository.search: A query that matches all objects.
MatchAllObjectsQuery() - Constructor for class net.cnri.repository.search.MatchAllObjectsQuery
matchesCommand(ActionEvent) - Method in class net.cnri.apps.dogui.view.HDLAction
matchHandle(Principal[], String) - Static method in class net.cnri.cert.CertUtil: Check to see if any of the input principals is an X509 name whose UID matches the handle
MatrixOps - Class in net.cnri.knowbots.matrix: MatrixOps performs operations on matrix objects.
MatrixOps() - Constructor for class net.cnri.knowbots.matrix.MatrixOps
MAX_BYTES_IN_BLOCKING_WINDOW - Static variable in class net.cnri.dobj.DOConnection
MAX_DOCS - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
MEMBER_CERT_TYPE_PREFIX - Static variable in class net.cnri.cert.CertUtil: Prefix of handle value types indicating group membership; append the group handle
MemoryDataElement - Class in net.cnri.repository.memory
MemoryDataElement(MemoryDigitalObject, String) - Constructor for class net.cnri.repository.memory.MemoryDataElement
MemoryDigitalObject - Class in net.cnri.repository.memory
MemoryDigitalObject(MemoryRepository, String) - Constructor for class net.cnri.repository.memory.MemoryDigitalObject
MemoryRepository - Class in net.cnri.repository.memory: A local Digital Object repository entirely in system memory.
MemoryRepository() - Constructor for class net.cnri.repository.memory.MemoryRepository
mergeValues(DOSearchResult, boolean) - Method in class net.cnri.apps.dogui.controller.DOSearchResult: Merge the information in the given search result with the info for this result.
metadata - Variable in class net.cnri.apps.doserver.txnlog.Transaction
METADATA_ELEMENT - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
MetadataUtil - Class in net.cnri.apps.doserver.web
MetadataUtil() - Constructor for class net.cnri.apps.doserver.web.MetadataUtil
migrate(String) - Method in class net.cnri.repository.layered.MigrationRepository: Migrates an object from the bottom repository to the top repository.
migrationComplete() - Method in class net.cnri.repository.layered.MigrationRepository: Checks whether all objects exist in the top.
MigrationRepository - Class in net.cnri.repository.layered: LayeredRepository for performing migration from top to bottom.
MigrationRepository(Repository, Repository) - Constructor for class net.cnri.repository.layered.MigrationRepository: Constructs a new repository allowing background migration from a bottom repository to a top repository.
MigrationRepository.MigrationCallable - Class in net.cnri.repository.layered: Callable suitable for calling in a background thread to perform migration and delete bottom objects.
MigrationRepository.MigrationCallable() - Constructor for class net.cnri.repository.layered.MigrationRepository.MigrationCallable
MIME_TYPE_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
MIN_BYTES_IN_BLOCKING_WINDOW - Static variable in class net.cnri.dobj.DOConnection
MINS_5 - Static variable in class net.cnri.repository.syncing.GenericSyncIntervalManager
MONTHLY - Static variable in class net.cnri.apps.doserver.Main
mouseClicked(MouseEvent) - Method in class net.cnri.apps.auditgui.AuditWindow
mouseClicked(MouseEvent) - Method in class net.cnri.apps.dogui.view.util.JLinkLabel
mouseEntered(MouseEvent) - Method in class net.cnri.apps.auditgui.AuditWindow
mouseEntered(MouseEvent) - Method in class net.cnri.apps.dogui.view.util.JLinkLabel
mouseExited(MouseEvent) - Method in class net.cnri.apps.auditgui.AuditWindow
mouseExited(MouseEvent) - Method in class net.cnri.apps.dogui.view.util.JLinkLabel
mousePressed(MouseEvent) - Method in class net.cnri.apps.auditgui.AuditWindow
mousePressed(MouseEvent) - Method in class net.cnri.apps.dogui.view.MainWindow.DragMouseAdapter
mousePressed(MouseEvent) - Method in class net.cnri.apps.dogui.view.ShowObjectWindow.DragMouseAdapter
mousePressed(MouseEvent) - Method in class net.cnri.apps.dogui.view.util.JLinkLabel
mouseReleased(MouseEvent) - Method in class net.cnri.apps.auditgui.AuditWindow
mouseReleased(MouseEvent) - Method in class net.cnri.apps.dogui.view.util.JLinkLabel
move(int) - Method in class net.cnri.repository.android.EmptyCursor
moveToFirst() - Method in class net.cnri.repository.android.EmptyCursor
moveToLast() - Method in class net.cnri.repository.android.EmptyCursor
moveToNext() - Method in class net.cnri.repository.android.EmptyCursor
moveToPosition(int) - Method in class net.cnri.repository.android.EmptyCursor
moveToPrevious() - Method in class net.cnri.repository.android.EmptyCursor

N

NAME - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
NAME - Static variable in class net.cnri.repository.android.Provider.ElementColumns
NAME_ATTRIBUTE - Static variable in class net.cnri.do_api.EntityMap
NAME_PROJECTION - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
NAME_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ElementColumns
NameValueKeyCreator - Class in net.cnri.repository.bdbje
NameValueKeyCreator() - Constructor for class net.cnri.repository.bdbje.NameValueKeyCreator
net.cnri.apps.auditgui - package net.cnri.apps.auditgui
net.cnri.apps.cmdline - package net.cnri.apps.cmdline
net.cnri.apps.doclient - package net.cnri.apps.doclient
net.cnri.apps.dogui.controller - package net.cnri.apps.dogui.controller
net.cnri.apps.dogui.view - package net.cnri.apps.dogui.view
net.cnri.apps.dogui.view.resources - package net.cnri.apps.dogui.view.resources
net.cnri.apps.dogui.view.util - package net.cnri.apps.dogui.view.util
net.cnri.apps.dojython - package net.cnri.apps.dojython
net.cnri.apps.doserver - package net.cnri.apps.doserver
net.cnri.apps.doserver.operators - package net.cnri.apps.doserver.operators
net.cnri.apps.doserver.txnlog - package net.cnri.apps.doserver.txnlog
net.cnri.apps.doserver.web - package net.cnri.apps.doserver.web
net.cnri.apps.doutilgui - package net.cnri.apps.doutilgui
net.cnri.apps.hdlstorage - package net.cnri.apps.hdlstorage
net.cnri.apps.sample - package net.cnri.apps.sample
net.cnri.apps.test - package net.cnri.apps.test
net.cnri.cert - package net.cnri.cert
net.cnri.debug - package net.cnri.debug
net.cnri.do_api - package net.cnri.do_api: This package is deprecated in favor of net.cnri.repository.networked.
net.cnri.dobj - package net.cnri.dobj
net.cnri.dobj.config - package net.cnri.dobj.config
net.cnri.dobj.delegation - package net.cnri.dobj.delegation
net.cnri.dobj.edo - package net.cnri.dobj.edo
net.cnri.dobj.emcompat - package net.cnri.dobj.emcompat
net.cnri.dobj.groups - package net.cnri.dobj.groups
net.cnri.knowbots.matrix - package net.cnri.knowbots.matrix
net.cnri.knowbots.standardops - package net.cnri.knowbots.standardops
net.cnri.repository - package net.cnri.repository
net.cnri.repository.android - package net.cnri.repository.android
net.cnri.repository.android.sqlite - package net.cnri.repository.android.sqlite
net.cnri.repository.bdbje - package net.cnri.repository.bdbje
net.cnri.repository.filesystem - package net.cnri.repository.filesystem
net.cnri.repository.highlevel - package net.cnri.repository.highlevel
net.cnri.repository.internal - package net.cnri.repository.internal
net.cnri.repository.layered - package net.cnri.repository.layered
net.cnri.repository.memory - package net.cnri.repository.memory
net.cnri.repository.networked - package net.cnri.repository.networked
net.cnri.repository.ref - package net.cnri.repository.ref
net.cnri.repository.rest - package net.cnri.repository.rest
net.cnri.repository.rest.servlet - package net.cnri.repository.rest.servlet
net.cnri.repository.search - package net.cnri.repository.search
net.cnri.repository.servlet - package net.cnri.repository.servlet
net.cnri.repository.syncing - package net.cnri.repository.syncing
net.cnri.repository.util - package net.cnri.repository.util
net.cnri.repository.wrapper - package net.cnri.repository.wrapper
NETWORK_ERROR - Static variable in exception net.cnri.dobj.DOException
NetworkedDataElement - Class in net.cnri.repository.networked
NetworkedDataElement(NetworkedDigitalObject, DataElement) - Constructor for class net.cnri.repository.networked.NetworkedDataElement
NetworkedDigitalObject - Class in net.cnri.repository.networked
NetworkedDigitalObject(NetworkedRepository, DigitalObject) - Constructor for class net.cnri.repository.networked.NetworkedDigitalObject
NetworkedRepository - Class in net.cnri.repository.networked: A wrapper on net.cnri.do_api.Repository.
NetworkedRepository(DOAuthentication, String) - Constructor for class net.cnri.repository.networked.NetworkedRepository
NetworkedRepository(DOAuthentication, DOServiceInfo) - Constructor for class net.cnri.repository.networked.NetworkedRepository
NetworkedRepository(String, String, int, byte[], String, byte[]) - Constructor for class net.cnri.repository.networked.NetworkedRepository: Constructs a NetworkedRepository using a specified host and port and secret key authentication.
NetworkedRepository(String, String, byte[]) - Constructor for class net.cnri.repository.networked.NetworkedRepository: Constructs a NetworkedRepository looking up connection parameters in the handle system and secret key authentication.
NetworkedRepository(String, String, int, byte[], String, String, String) - Constructor for class net.cnri.repository.networked.NetworkedRepository: Constructs a NetworkedRepository using a specified host and port and public key authentication.
NetworkedRepository(String, String, String, String) - Constructor for class net.cnri.repository.networked.NetworkedRepository: Constructs a NetworkedRepository looking up connection parameters in the handle system and public key authentication.
NetworkedSearchResultDataElement - Class in net.cnri.repository.networked: Allows you to interact with the attributes on a DataElement search result locally without making unnecessary network calls.
NetworkedSearchResultDataElement(NetworkedSearchResultDigitalObject, String) - Constructor for class net.cnri.repository.networked.NetworkedSearchResultDataElement
NetworkedSearchResultDigitalObject - Class in net.cnri.repository.networked: Wraps a searchResult allowing it to be treated as if it were a real DigitalObject.
NetworkedSearchResultDigitalObject(NetworkedRepository, HeaderSet) - Constructor for class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
NEVER - Static variable in class net.cnri.apps.doserver.Main
NEW_SERVER_ID_PREFIX - Static variable in class net.cnri.apps.dogui.controller.RepoRunner
NEW_USER_ACTION - Static variable in class net.cnri.apps.doserver.UserAccountServlet
NewUserWindow - Class in net.cnri.apps.dogui.view
NewUserWindow(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.NewUserWindow
next() - Method in class net.cnri.repository.android.CursorIteratorImpl
next() - Method in class net.cnri.repository.search.QueryResults
next() - Method in class net.cnri.repository.util.AbstractCloseableIterator: Returns the next element in the iteration.
next() - Method in class net.cnri.repository.util.CloseableIteratorFromIterator
nextElement() - Method in class net.cnri.apps.doserver.txnlog.ConcatenatedTransactionQueue.QueueScanner
nextElement() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue.QueueScanner
nextElement() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB.QueueScanner
niceSize(long) - Static method in class net.cnri.apps.dogui.controller.DOUtil: Return a human-readable description of the number of bytes given
NO_DEFAULT - Static variable in class net.cnri.apps.doserver.SetupHelper
NO_LIGHT - Static variable in class net.cnri.apps.dogui.view.SyncStatusView
NO_LIMIT - Static variable in class net.cnri.apps.doserver.SetupHelper
NO_SUCH_ELEMENT_ERROR - Static variable in exception net.cnri.dobj.DOException
NO_SUCH_OBJECT_ERROR - Static variable in exception net.cnri.dobj.DOException
NoSuchDataElementException - Exception in net.cnri.repository
NoSuchDataElementException(String) - Constructor for exception net.cnri.repository.NoSuchDataElementException
NoSuchDataElementException(String, String) - Constructor for exception net.cnri.repository.NoSuchDataElementException
NoSuchDigitalObjectException - Exception in net.cnri.repository
NoSuchDigitalObjectException(String) - Constructor for exception net.cnri.repository.NoSuchDigitalObjectException
NOTES_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
NULL - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
NUM_ITEMS_IN_SHORT_LIST - Static variable in class net.cnri.apps.dogui.view.SearchResultsList

O

OBJ_CREDENTIALS_ELEMENT - Static variable in class net.cnri.apps.doserver.operators.StandardOperations
OBJ_CREDENTIALS_ELEMENT - Static variable in class net.cnri.knowbots.standardops.StandardOperations
OBJ_TYPES_ELEMENT - Static variable in class net.cnri.apps.doserver.operators.StandardOperations
OBJ_TYPES_ELEMENT - Static variable in class net.cnri.knowbots.standardops.StandardOperations
OBJECT_ALREADY_EXISTS - Static variable in exception net.cnri.dobj.DOException
OBJECT_ATTS_MSGTYPE - Static variable in interface net.cnri.dobj.DOConstants
OBJECT_DEFAULT_PROJECTION - Static variable in class net.cnri.repository.android.Provider.ObjectColumns
OBJECT_ID_PARAM - Static variable in class net.cnri.apps.doserver.AuditHookImpl
OBJECT_ID_PARAM - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
OBJECT_NAME_HDL_TYPE - Static variable in interface net.cnri.dobj.DOConstants
OBJECT_SERVER_HDL_TYPE - Static variable in interface net.cnri.dobj.DOConstants
OBJECT_SVRINFO_HDL_TYPE - Static variable in interface net.cnri.dobj.DOConstants
ObjectAttributeRequestHandler - Class in net.cnri.repository.rest.servlet
ObjectAttributeRequestHandler(RequestPath, HttpServletRequest, HttpServletResponse, Repository) - Constructor for class net.cnri.repository.rest.servlet.ObjectAttributeRequestHandler
ObjectElementAttributeRequestHandler - Class in net.cnri.repository.rest.servlet
ObjectElementAttributeRequestHandler(RequestPath, HttpServletRequest, HttpServletResponse, Repository) - Constructor for class net.cnri.repository.rest.servlet.ObjectElementAttributeRequestHandler
ObjectElementRequestHandler - Class in net.cnri.repository.rest.servlet
ObjectElementRequestHandler(RequestPath, HttpServletRequest, HttpServletResponse, Repository) - Constructor for class net.cnri.repository.rest.servlet.ObjectElementRequestHandler
objectExists() - Method in class net.cnri.dobj.DOMetadata: Returns true if the object exists
objectForGroup(String) - Static method in class net.cnri.dobj.groups.GroupUtil: Returns the id of the DO which manages groups for the given id.
objectForResult(DOSearchResult) - Method in class net.cnri.apps.dogui.view.SearchResultsList: Return a DigitalObject interface to the object contained in the given search result.
objectID - Variable in class net.cnri.apps.doserver.txnlog.Transaction
ObjectRequestHandler - Class in net.cnri.repository.rest.servlet
ObjectRequestHandler(RequestPath, HttpServletRequest, HttpServletResponse, Repository) - Constructor for class net.cnri.repository.rest.servlet.ObjectRequestHandler
OBJECTS - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
objectsNeedingReindexingQuery() - Method in class net.cnri.apps.doserver.operators.DefaultIndexBuilder
objectsNeedingReindexingQuery() - Method in interface net.cnri.apps.doserver.operators.IndexBuilder: Returns a query which matches objects which need to be reindexed.
ObjectSyncer - Class in net.cnri.apps.doserver
ObjectSyncer() - Constructor for class net.cnri.apps.doserver.ObjectSyncer
ofCursor(Cursor) - Method in interface net.cnri.repository.android.CursorIteratorImpl.OfCursor: Returns an object from the current state of the passed cursor.
ofHeaderSet(HeaderSet) - Static method in class net.cnri.do_api.SearchResult
onCreate(SQLiteDatabase) - Method in class net.cnri.repository.android.sqlite.DatabaseHelper
onlyContainsMustNotClauses() - Method in class net.cnri.repository.search.BooleanQuery
onMove(int, int) - Method in class net.cnri.repository.android.EmptyCursor
onOpen(SQLiteDatabase) - Method in class net.cnri.repository.android.sqlite.DatabaseHelper
onUpgrade(SQLiteDatabase, int, int) - Method in class net.cnri.repository.android.sqlite.DatabaseHelper
OP_ID_PARAM - Static variable in class net.cnri.apps.doserver.AuditHookImpl
openAssetFile(Uri, String) - Method in class net.cnri.repository.android.ProviderClientProxy
openFile(Uri, String) - Method in class net.cnri.repository.android.ProviderClientProxy
OPENID_ATTRIBUTE - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
OPENID_IDENTITY - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
operation - Variable in class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
OPERATION_NOT_AVAILABLE - Static variable in exception net.cnri.dobj.DOException
operationIsAllowed(DOOperationContext) - Method in class net.cnri.apps.doserver.Authorizer: This is called to determine if the given operation can be performed in the given context (ie if the caller has permission to perform the operation).
operationIsAllowed(DOOperationContext, String, String) - Method in class net.cnri.apps.doserver.Authorizer: This is called to determine if the given operation can be performed in the given context.
out - Variable in class net.cnri.apps.doserver.SetupHelper
OUTBOX - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
OWNER_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
OWNER_ATTRIBUTES_KEY - Static variable in class net.cnri.apps.doserver.Main

P

pad(int) - Static method in class net.cnri.apps.doserver.web.MetadataUtil
paint(Graphics) - Method in class net.cnri.apps.dogui.view.HandleValueRenderer
Pair - Class in net.cnri.repository.util
Pair(String, String) - Constructor for class net.cnri.repository.util.Pair
PARAM_ACTUAL_TIMESTAMP - Static variable in class net.cnri.apps.dogui.controller.DNAPusher
PARAM_ACTUAL_TIMESTAMP - Static variable in class net.cnri.apps.doserver.ObjectSyncer
PARAM_ACTUAL_TIMESTAMP - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
PARAM_ACTUAL_TIMESTAMP - Static variable in class net.cnri.apps.doserver.ReplicationManager
PARAM_ATTRIBUTES - Static variable in interface net.cnri.dobj.DOConstants
PARAM_ELEMENT_ID - Static variable in class net.cnri.apps.dogui.controller.DNAPusher
PARAM_ELEMENT_ID - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
PARAM_ELEMENT_ID - Static variable in class net.cnri.apps.doserver.operators.StandardOperations
PARAM_ELEMENT_ID - Static variable in interface net.cnri.dobj.DOConstants
PARAM_ELEMENT_ID - Static variable in class net.cnri.knowbots.standardops.StandardOperations
PARAM_GET_DATA_LEN - Static variable in class net.cnri.apps.doserver.operators.StandardOperations
PARAM_GET_DATA_START - Static variable in class net.cnri.apps.doserver.operators.StandardOperations
PARAM_OBJ_ID - Static variable in class net.cnri.apps.dogui.controller.DNAPusher
PARAM_OBJ_ID - Static variable in class net.cnri.apps.doserver.ObjectSyncer
PARAM_OBJ_ID - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
PARAM_OBJ_ID - Static variable in class net.cnri.apps.doserver.ReplicationManager
PARAM_TIMESTAMP - Static variable in class net.cnri.apps.dogui.controller.DNAPusher
PARAM_TIMESTAMP - Static variable in class net.cnri.apps.doserver.ObjectSyncer
PARAM_TIMESTAMP - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
PARAM_TIMESTAMP - Static variable in class net.cnri.apps.doserver.ReplicationManager
PARAM_TXN_ID - Static variable in class net.cnri.apps.dogui.controller.DNAPusher
PARAM_TXN_ID - Static variable in class net.cnri.apps.doserver.ObjectSyncer
PARAM_TXN_ID - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
PARAM_TXN_ID - Static variable in class net.cnri.apps.doserver.ReplicationManager
PARAM_TXN_TYPE - Static variable in class net.cnri.apps.dogui.controller.DNAPusher
PARAM_TXN_TYPE - Static variable in class net.cnri.apps.doserver.ObjectSyncer
PARAM_TXN_TYPE - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
PARAM_TXN_TYPE - Static variable in class net.cnri.apps.doserver.ReplicationManager
params - Variable in class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
ParcelableQuery - Class in net.cnri.repository.android
ParcelableQuery(Query) - Constructor for class net.cnri.repository.android.ParcelableQuery
parse(String) - Method in class net.cnri.repository.util.FastDateFormat: Parses a date representation which is generally ISO8601-compliant into milliseconds since the epoch.
parse(String, TimeZone) - Static method in class net.cnri.repository.util.FastDateFormat: Parses a date representation which is generally ISO8601-compliant into milliseconds since the epoch, using a given time zone if the time zone is not explicit in the input.
parseDate(String) - Static method in class net.cnri.apps.dogui.controller.DOSearch
parseQueryParameters(String) - Static method in class net.cnri.apps.doserver.web.MetadataUtil
parseSearch(String) - Method in class net.cnri.apps.dogui.controller.DOSearch: Replace the query parameters with the given query
parseUtc(String) - Static method in class net.cnri.repository.util.FastDateFormat: Parses a date representation which is generally ISO8601-compliant into milliseconds since the epoch, assuming UTC if the time zone is not explicit in the input.
performLocalOperation(DOServerOperationContext, boolean, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.Main: Invoke the given operation in the repository after checking that the client has permission to invoke the given operation
performMigrationFromFileSystemToBerkeleyDB(File) - Static method in class net.cnri.apps.doserver.txnlog.TxnLogMigrationTool
performOperation(DOOperationContext, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.AuditHookImpl: Performs the given operation (which this object has advertised that it can handle) which consists of reading input (if any is expected) from the given InputStream and writing the output of the operation (if any) to the OutputStream.
performOperation(DOOperationContext, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.ExternalInterface: Performs the given operation (which this object has advertised that it can handle) which consists of reading input (if any is expected) from the given InputStream and writing the output of the operation (if any) to the OutputStream.
performOperation(String, String, HeaderSet) - Method in class net.cnri.apps.doserver.InternalRepository: Invoke a low-level operation on this object, returning the input and output streams for the operation in a StreamPair.
performOperation(String, String, HeaderSet, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.Main: This method can be called by an outside object when this repository is run in embedded mode.
performOperation(DOServerOperationContext, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.Main
performOperation(DOOperationContext, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.operators.AbstractDelegationOperations
performOperation(DOOperationContext, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.operators.LuceneIndexer: Performs the given operation (which this object has advertised that it can handle) which consists of reading input (if any is expected) from the given InputStream and writing the output of the operation (if any) to the OutputStream.
performOperation(DOOperationContext, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.operators.StandardOperations: Performs the given operation (which this object has advertised that it can handle) which consists of reading input (if any is expected) from the given InputStream and writing the output of the operation (if any) to the OutputStream.
performOperation(DOOperationContext, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.ReplicationOperator: Performs the given operation (which this object has advertised that it can handle) which consists of reading input (if any is expected) from the given InputStream and writing the output of the operation (if any) to the OutputStream.
performOperation(String, HeaderSet) - Method in class net.cnri.do_api.DigitalObject: Invoke a low-level operation on this object, returning the input and output streams for the operation in a StreamPair.
performOperation(String, String, HeaderSet) - Method in class net.cnri.do_api.Repository: Invoke a low-level operation on the given object, returning the input and output streams for the operation in a StreamPair.
performOperation(String, String, HeaderSet) - Method in class net.cnri.dobj.DOClient: Performs the specified operation on the object identified by "objectID" with the given input.
performOperation(String, String, String, HeaderSet) - Method in class net.cnri.dobj.DOClient
performOperation(String, String) - Method in class net.cnri.dobj.DOClientConnection: Submit a new operation on a new channel and return an InputStream from which the results of the operation can be read.
performOperation(String, String, HeaderSet) - Method in class net.cnri.dobj.DOClientConnection: Submit a new operation on a new channel and return an InputStream from which the results of the operation can be read.
performOperation(DOOperationContext, InputStream, OutputStream) - Method in interface net.cnri.dobj.DOOperation: Performs the given operation (which this object has advertised that it can handle) which consists of reading input (if any is expected) from the given InputStream and writing the output of the operation (if any) to the OutputStream.
performOperation(String, String, String, HeaderSet, InputStream, OutputStream) - Method in interface net.cnri.dobj.DOOperationContext: Performs the specified operation with the identity of the caller, or as the container repository if the forwarding operations are configured to use the repository's own identity for forwarded operations.
performOperation(String, String, String, HeaderSet) - Method in interface net.cnri.dobj.edo.EDOOperationContext: Performs the specified operation with the identity of the server.
performOperation(EDOOperationContext, InputStream, OutputStream) - Method in class net.cnri.dobj.edo.EDOOperator: Performs the given operation (which this object has advertised that it can handle) which consists of reading input (if any is expected) from the given InputStream and writing the output of the operation (if any) to the OutputStream.
performOperation(DOOperationContext, InputStream, OutputStream) - Method in class net.cnri.knowbots.matrix.MatrixOps
performOperation(DOOperationContext, InputStream, OutputStream) - Method in class net.cnri.knowbots.standardops.StandardOperations: Performs the given operation (which this object has advertised that it can handle) which consists of reading input (if any is expected) from the given InputStream and writing the output of the operation (if any) to the OutputStream.
performOperation(String, String, String, HeaderSet, InputStream, OutputStream) - Method in class net.cnri.repository.internal.InternalOperationContext
performOperation(String, Map<String, String>) - Method in class net.cnri.repository.networked.NetworkedDigitalObject: Perform an arbitrary operation.
performOperation(String, HeaderSet) - Method in class net.cnri.repository.networked.NetworkedDigitalObject: Perform an arbitrary operation.
performOperation(String, String, Map<String, String>) - Method in class net.cnri.repository.networked.NetworkedRepository: Perform an arbitrary operation.
performOperation(String, String, HeaderSet) - Method in class net.cnri.repository.networked.NetworkedRepository: Perform an arbitrary operation.
performOps(String, String, String) - Method in class net.cnri.apps.test.IndexTest
PerformOpServlet - Class in net.cnri.apps.doserver: Servlet that provides a DO operation invoker in which requests provide the object ID (id query parameter), operation ID (op query parameter), and a set of paramters (all query parameters starting with "param.").
PerformOpServlet(Main, ExecutorService, HTTPConnectionHandler) - Constructor for class net.cnri.apps.doserver.PerformOpServlet
PerformOpWindow - Class in net.cnri.apps.doclient
PerformOpWindow(DOClient, String, String, String, String) - Constructor for class net.cnri.apps.doclient.PerformOpWindow
performRemoteOperation(DOServerOperationContext, Authorizer.AuthorizationInfo, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.Main: Forward the operation to the repository that is responsible for the object, if the client is permitted to do so.
performSearch(DOSearch, Repository) - Method in class net.cnri.apps.dogui.view.SearchResultsView: Begin processing the new search
performSearch(DOSearch) - Method in class net.cnri.apps.dogui.view.SearchWindow
PERMISSION_DENIED_ERROR - Static variable in exception net.cnri.dobj.DOException
PKAuthentication - Class in net.cnri.dobj: A PKAuthentication object uses a private key to prove our identity.
PKAuthentication(String, PrivateKey) - Constructor for class net.cnri.dobj.PKAuthentication: Construct an authentication object that uses the given private key to prove that we are the entity identified by myID.
PORT_KEY - Static variable in class net.cnri.apps.doserver.Main
PreDepositWindow - Class in net.cnri.apps.dogui.view
PreDepositWindow(AdminToolUI, File[]) - Constructor for class net.cnri.apps.dogui.view.PreDepositWindow
preferences - Variable in class net.cnri.apps.dogui.controller.Main
preferencesUpdated() - Method in class net.cnri.apps.dogui.view.HDLAction
prefs() - Method in class net.cnri.apps.dogui.controller.Main: Get the preferences table
prefs() - Method in class net.cnri.repository.android.ClientRepository
principalForHandle(String) - Static method in class net.cnri.cert.CertUtil: Convert a handle into an X509 principal (using the UID attribute)
printTimes(PrintStream) - Method in class net.cnri.debug.TimeHelper
printUsage() - Static method in class net.cnri.apps.cmdline.KeyGenerator
PRIVATE_KEY_FILE - Static variable in class net.cnri.apps.doserver.Main
processIncomingChunk(ByteBuffer) - Method in class net.cnri.dobj.ConnectionEncryption: Decrypts the incoming chunk of bytes and puts the result back into the given ByteBuffer for reading.
processIncomingChunk(ByteBuffer) - Method in class net.cnri.dobj.DESEncryption
processIncomingChunk(ByteBuffer) - Method in class net.cnri.dobj.GenericEncryption
processOutgoingChunk(ByteBuffer) - Method in class net.cnri.dobj.ConnectionEncryption: Processes the outgoing chunk of bytes and returns the processed version.
processOutgoingChunk(ByteBuffer) - Method in class net.cnri.dobj.DESEncryption: Processes the outgoing chunk of bytes and returns the processed version.
processOutgoingChunk(ByteBuffer) - Method in class net.cnri.dobj.GenericEncryption: Processes the outgoing chunk of bytes and returns the processed version.
processTransaction(Transaction) - Method in interface net.cnri.apps.doserver.txnlog.TransactionCallback: Process the given transaction which was received via the stream in the RetrieveTxnResponse message.
PROTOCOL_ERROR - Static variable in exception net.cnri.dobj.DOException
Provider - Class in net.cnri.repository.android
Provider() - Constructor for class net.cnri.repository.android.Provider
Provider.AttributeColumns - Class in net.cnri.repository.android
Provider.ElementColumns - Class in net.cnri.repository.android
Provider.ObjectColumns - Class in net.cnri.repository.android
ProviderClientProxy - Class in net.cnri.repository.android
ProviderClientProxy(ContentProviderClient, String) - Constructor for class net.cnri.repository.android.ProviderClientProxy
ProxiedAuthentication - Class in net.cnri.dobj
ProxiedAuthentication(String, DOConnection) - Constructor for class net.cnri.dobj.ProxiedAuthentication
PUBLIC_KEY_FILE - Static variable in class net.cnri.apps.doserver.Main
PUBLIC_KEY_HDL_IDX - Static variable in class net.cnri.apps.doserver.Main
publishCert(String, Certificate) - Method in class net.cnri.apps.cmdline.CertGenerator
pullsOverwriteIfNewer() - Method in class net.cnri.repository.syncing.SyncingConfig
PUSH_REPO_TXN_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
put(String, String) - Method in class net.cnri.repository.highlevel.AttributeMap
put(String, String) - Method in class net.cnri.repository.networked.MapFromHeaderSet
put(String, String) - Method in class net.cnri.repository.util.StringPairListMap: The put method of this class always returns null.
putAll(Map<? extends String, ? extends String>) - Method in class net.cnri.repository.highlevel.AttributeMap
putAll(Map<? extends String, ? extends String>) - Method in class net.cnri.repository.networked.MapFromHeaderSet

Q

query(Uri, String[], String, String[], String) - Method in class net.cnri.repository.android.ProviderClientProxy
Query - Interface in net.cnri.repository.search: A query for a repository.
QueryParams - Class in net.cnri.repository.search: Parameters to a repository search, such as pagination and sorting.
QueryParams(int, int, List<SortField>) - Constructor for class net.cnri.repository.search.QueryParams: Construct a QueryParams.
QueryParams(int, int, List<SortField>, List<String>) - Constructor for class net.cnri.repository.search.QueryParams: Construct a QueryParams.
QueryParams(int, int, List<SortField>, List<String>, Map<String, String>) - Constructor for class net.cnri.repository.search.QueryParams: Construct a QueryParams.
QueryRequestHandler - Class in net.cnri.repository.rest.servlet
QueryRequestHandler(RequestPath, HttpServletRequest, HttpServletResponse, Repository) - Constructor for class net.cnri.repository.rest.servlet.QueryRequestHandler
QueryResults<T> - Class in net.cnri.repository.search: A CloseableIterator which carries a size and an optional boolean indicating whether there are more results.
QueryResults(int, CloseableIterator<T>) - Constructor for class net.cnri.repository.search.QueryResults
QueryResults(int, Boolean, CloseableIterator<T>) - Constructor for class net.cnri.repository.search.QueryResults
QueryResultsForJson - Class in net.cnri.repository.rest
QueryResultsForJson(List<RepositoryJsonSerializerV2.DOView>, int, int, int) - Constructor for class net.cnri.repository.rest.QueryResultsForJson
queryToString(Query) - Static method in class net.cnri.repository.networked.NetworkedRepository
queryToString(Query) - Static method in class net.cnri.repository.rest.RestRepository
QueryVisitor<T> - Interface in net.cnri.repository.search: A specification of some behavior on each kind of query.

R

RawQuery - Class in net.cnri.repository.search: A query based on a raw String to be interpreted in a potentially repository-specific way.
RawQuery(String) - Constructor for class net.cnri.repository.search.RawQuery
read() - Method in class net.cnri.do_api.DataElement: Returns an InputStream from which the element's data can be read
read(long, long) - Method in class net.cnri.repository.AbstractDataElement
read(String, String) - Method in class net.cnri.repository.AbstractDirectRepository
read() - Method in class net.cnri.repository.AbstractFileDataElement
read() - Method in class net.cnri.repository.android.EmbeddedDataElement
read(long, long) - Method in class net.cnri.repository.android.EmbeddedDataElement
read(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
read(String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
read() - Method in interface net.cnri.repository.DataElement: Provides access to the data as an InputStream.
read(long, long) - Method in interface net.cnri.repository.DataElement: Provides access to a specified portion of the data as an InputStream.
read(String, String) - Method in interface net.cnri.repository.DirectRepository: Provides access to the data as an InputStream.
read() - Method in class net.cnri.repository.layered.LayeredDataElement
read(String, String) - Method in class net.cnri.repository.layered.LayeredRepository
read() - Method in class net.cnri.repository.memory.MemoryDataElement
read() - Method in class net.cnri.repository.networked.NetworkedDataElement
read(long, long) - Method in class net.cnri.repository.networked.NetworkedDataElement
read() - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
read() - Method in class net.cnri.repository.rest.RestDataElement
read() - Method in class net.cnri.repository.util.LimitedInputStream
read(byte[], int, int) - Method in class net.cnri.repository.util.LimitedInputStream
read() - Method in class net.cnri.repository.wrapper.DataElementWrapper
read(long, long) - Method in class net.cnri.repository.wrapper.DataElementWrapper
read(String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
readHeadAt(byte[], int) - Static method in class net.cnri.repository.bdbje.KeyUtil
readHeaders(InputStream) - Method in class net.cnri.dobj.HeaderSet: This method will populate the set of headers with data from the given InputStream.
readHeadersFromBytes(byte[]) - Method in class net.cnri.dobj.HeaderSet
readHeadersFromString(String) - Method in class net.cnri.dobj.HeaderSet: This method will populate the set of headers with data from the given encoded String.
readJsonStream(InputStream) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
readJsonStream(InputStream) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
readObjectFromFile(File) - Static method in class net.cnri.repository.util.BsonUtil
readPermissions(InputStream) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor: Populate the GUI with a user-friendly view of the permissions in the given stream.
readPKAuthenticationFromFile(String, String, String) - Static method in class net.cnri.dobj.PKAuthentication: Convenience method to read a private key from a file, decrypt that key with the given passphrase and return a PKAuthentication object for the given ID.
readQueryFromParcel(Parcel) - Static method in class net.cnri.repository.android.ParcelableQuery
readQueryFromString(String) - Static method in class net.cnri.repository.android.ParcelableQuery
readTxn(InputStream) - Static method in class net.cnri.apps.doserver.txnlog.Transaction: Read a transaction from the given input stream
realMain(String[]) - Static method in class net.cnri.apps.doserver.Main
reconnect(String) - Method in class net.cnri.dobj.DOClientConnection: Connect directly to one of a the servers in the service identified by the given identifier, if we aren't already connected.
reconnect(DOServiceInfo) - Method in class net.cnri.dobj.DOClientConnection: Connect directly to one of a the servers in the service
recordOperation(HeaderSet, InputStream, OutputStream) - Method in class net.cnri.apps.doserver.AuditLog: This initiates logging of the operation specified in the given requestHeaders, along with the bytes sent over the input and output streams.
recordTick(String) - Method in class net.cnri.debug.TimeHelper
RED_LIGHT - Static variable in class net.cnri.apps.dogui.view.SyncStatusView
REDIRECT_STDERR_KEY - Static variable in class net.cnri.apps.doserver.Main
ReferenceCountingRepositoryWrapper - Class in net.cnri.repository.ref
ReferenceCountingRepositoryWrapper(Repository, DigitalObjectReferenceCounter) - Constructor for class net.cnri.repository.ref.ReferenceCountingRepositoryWrapper
REFERENCES_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
refresh() - Method in class net.cnri.do_api.DigitalObject: Refresh information about Data Elements or Attributes.
REGISTER_HANDLES_KEY - Static variable in class net.cnri.apps.doserver.Main
registerContentObserver(ContentObserver) - Method in class net.cnri.repository.android.EmptyCursor
registerDataSetObserver(DataSetObserver) - Method in class net.cnri.repository.android.EmptyCursor
registerEvent(Context, String, Map<String, String>) - Static method in class net.cnri.repository.android.EventApi: Registers an event.
registerEvent(Context, String, String...) - Static method in class net.cnri.repository.android.EventApi: Registers an event.
registerEvent(Context, String) - Static method in class net.cnri.repository.android.EventApi: Registers an event.
registerEvent(Context, String, Object) - Static method in class net.cnri.repository.android.EventApi: Registers an event.
registerHandle(String, String) - Method in class net.cnri.apps.doserver.Main: Creates the given handle, if necessary, and sets the object server for it to this object server.
registerServer(String, String, byte[], InetAddress, int, int, int, int, String, File, File, File, PrivateKey) - Method in class net.cnri.apps.doserver.SetupHelper: If serviceID is null, gets a handle through the hosting service.
REINDEX_OBJECT_ID - Static variable in interface net.cnri.dobj.DOConstants
reindexAllObjects() - Method in class net.cnri.repository.networked.NetworkedRepository
reindexObject(String) - Method in class net.cnri.apps.doserver.operators.LuceneIndexer
reindexObject(String) - Method in class net.cnri.repository.networked.NetworkedRepository: Reindex the object with the specified handle.
relaxedDate(String) - Static method in class net.cnri.apps.doserver.web.MetadataUtil
release() - Method in class net.cnri.repository.android.ProviderClientProxy
releaseAndCloseIfNeeded() - Method in class net.cnri.apps.doserver.operators.IndexSearcherManager.LockTrackingIndexSearcherWrapper
REMOVE - Static variable in class net.cnri.apps.dogui.view.DOImages
remove() - Method in class net.cnri.repository.android.CursorIteratorImpl
remove(Object) - Method in class net.cnri.repository.highlevel.AttributeMap
remove(Object) - Method in class net.cnri.repository.networked.MapFromHeaderSet
remove() - Method in class net.cnri.repository.search.QueryResults
remove() - Method in class net.cnri.repository.util.AbstractCloseableIterator: Throws UnsupportedOperationException.
remove() - Method in class net.cnri.repository.util.CloseableIteratorFromIterator
remove(Object) - Method in class net.cnri.repository.util.StringPairListMap
REMOVE_OP - Static variable in class net.cnri.apps.test.IndexTest
REMOVE_TYPE_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
removeAllFiles(File) - Static method in class net.cnri.apps.doserver.AuditLogArchiver
removeAllHeaders() - Method in class net.cnri.dobj.HeaderSet: Removes all headers from the HeaderSet
removeEntity(EntityMap.Entity) - Method in class net.cnri.do_api.EntityMap: Remove the given entity from the list
removeFromListAttribute(String, String) - Method in class net.cnri.repository.highlevel.HighLevelDigitalObject: Treats the value of the attribute as a new line separated list of strings.
removeFromListAttribute(String, int) - Method in class net.cnri.repository.highlevel.HighLevelDigitalObject: Treats the value of the attribute as a new line separated list of strings.
removeHandleBytesAndFirstDelimeterFromKey(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
removeHandleBytesFromKey(byte[]) - Static method in class net.cnri.repository.bdbje.KeyUtil
removeHeadersWithKey(String) - Method in class net.cnri.dobj.HeaderSet: Removes all headers with the given key
removeLinkListener(JLinkListener) - Method in class net.cnri.apps.dogui.view.util.JLinkLabel
removeListener(SynchronizerStatusListener) - Method in class net.cnri.apps.dogui.controller.DNASynchronizer: Remove a listener so that it will no longer be notified of changes in the status of the synchronizer.
removePullQuery(String) - Method in class net.cnri.repository.syncing.SyncingConfig
removePushQuery(String) - Method in class net.cnri.repository.syncing.SyncingConfig
removeQueueListener(TransactionQueueListener) - Method in class net.cnri.apps.doserver.txnlog.AbstractTransactionQueue
reopen() - Method in class net.cnri.apps.doserver.operators.IndexSearcherManager
REPLICATION_ERROR - Static variable in exception net.cnri.dobj.DOException
REPLICATION_ITEM_OUT_OF_DATE - Static variable in exception net.cnri.dobj.DOException
ReplicationLog - Class in net.cnri.apps.doserver
ReplicationLog() - Constructor for class net.cnri.apps.doserver.ReplicationLog
ReplicationManager - Class in net.cnri.apps.doserver
ReplicationManager(Main, Storage) - Constructor for class net.cnri.apps.doserver.ReplicationManager
ReplicationOperator - Class in net.cnri.apps.doserver: This class implements a digital object operator that can return a list of transactions, and the details for those transactions so that other servers can mirror the digital objects from this server.
REPO_DEFAULT_RIGHTS_ELEMENT - Static variable in class net.cnri.apps.doserver.Authorizer
REPO_RIGHTS_ELEMENT_ID - Static variable in interface net.cnri.dobj.DOConstants
RepoRunner - Class in net.cnri.apps.dogui.controller
RepoRunner(File, Main, String, int, String, RepoRunner) - Constructor for class net.cnri.apps.dogui.controller.RepoRunner: Construct the synchronizer that provides an interface to start and stop the server.
Repositories - Class in net.cnri.repository: Factory and utility methods for the Repository class.
Repository - Class in net.cnri.do_api: This object provides high level access to a digital object repository.
Repository(DOAuthentication, String) - Constructor for class net.cnri.do_api.Repository: Constructor for a repository that interfaces an object that provides an interface to the with the given authentication information
Repository(DOAuthentication, DOServiceInfo) - Constructor for class net.cnri.do_api.Repository: Constructor for a repository that interfaces an object that provides an interface to the with the given authentication information
Repository(String, DOClientConnection) - Constructor for class net.cnri.do_api.Repository: Construct a Repository instance which can be used to talk over existing connections to DO servers.
Repository - Interface in net.cnri.repository: An object for accessing a Digital Object Repository.
Repository.CloseableIterator<T> - Interface in net.cnri.do_api
Repository.QueryResults - Class in net.cnri.do_api
Repository.QueryResults(Repository.CloseableIterator<HeaderSet>, int) - Constructor for class net.cnri.do_api.Repository.QueryResults
Repository.QueryResults(Repository.CloseableIterator<HeaderSet>, int, Boolean) - Constructor for class net.cnri.do_api.Repository.QueryResults
REPOSITORY_AUTHENTICATION_ERROR - Static variable in exception net.cnri.dobj.DOException
RepositoryException - Exception in net.cnri.repository: Base class for exceptions thrown by Repository operations.
RepositoryJSONSerializer - Class in net.cnri.repository.util: Provides methods for serializing an arbitrary DigitalDbject to a JSON string and back again.
RepositoryJSONSerializer() - Constructor for class net.cnri.repository.util.RepositoryJSONSerializer
RepositoryJSONSerializer.DOView - Class in net.cnri.repository.util: The DOView object loads all attributes and elements of a digital object into into a java object.
RepositoryJSONSerializer.DOView(DigitalObject) - Constructor for class net.cnri.repository.util.RepositoryJSONSerializer.DOView
RepositoryJSONSerializer.DOView(DigitalObject, List<String>) - Constructor for class net.cnri.repository.util.RepositoryJSONSerializer.DOView
RepositoryJSONSerializer.DOView.ElementView - Class in net.cnri.repository.util
RepositoryJSONSerializer.DOView.ElementView(DataElement, boolean) - Constructor for class net.cnri.repository.util.RepositoryJSONSerializer.DOView.ElementView
RepositoryJsonSerializerV2 - Class in net.cnri.repository.util: Provides methods for serializing an arbitrary DigitalDbject to a JSON string and back again.
RepositoryJsonSerializerV2() - Constructor for class net.cnri.repository.util.RepositoryJsonSerializerV2
RepositoryJsonSerializerV2.DOView - Class in net.cnri.repository.util: The DOView object loads all attributes and elements of a digital object into into a java object.
RepositoryJsonSerializerV2.DOView(DigitalObject) - Constructor for class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView
RepositoryJsonSerializerV2.DOView(DigitalObject, List<String>) - Constructor for class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView
RepositoryJsonSerializerV2.DOView.ElementView - Class in net.cnri.repository.util
RepositoryJsonSerializerV2.DOView.ElementView(DataElement, boolean) - Constructor for class net.cnri.repository.util.RepositoryJsonSerializerV2.DOView.ElementView
RepositoryWrapper - Class in net.cnri.repository.wrapper: A general wrapper delegating behavior to another repository.
RepositoryWrapper(Repository) - Constructor for class net.cnri.repository.wrapper.RepositoryWrapper
requery() - Method in class net.cnri.repository.android.EmptyCursor
requestDownloadSync() - Method in class net.cnri.repository.android.ClientRepository
RequestHandler - Class in net.cnri.repository.rest.servlet
RequestHandler(RequestPath, HttpServletRequest, HttpServletResponse, Repository) - Constructor for class net.cnri.repository.rest.servlet.RequestHandler
RequestPath - Class in net.cnri.repository.rest.servlet
RequestPath(String) - Constructor for class net.cnri.repository.rest.servlet.RequestPath
RequestPath.Type - Enum in net.cnri.repository.rest.servlet
reset() - Method in class net.cnri.repository.util.LimitedInputStream
reset() - Method in class net.cnri.repository.util.Timer
resetFields() - Method in class net.cnri.dobj.DOMetadata: Resets the contents of the metadata
resolvePublicKey(String) - Method in class net.cnri.apps.cmdline.CertGenerator: Securely resolve a public key for the given handle
resolvePublicKeys(HandleResolver, String) - Static method in class net.cnri.cert.CertUtil: Securely resolve a public key for the given handle
resolvePublicKeys(String) - Method in class net.cnri.dobj.DOServerConnection: Securely resolve a public key for the given handle
resolveRepositoryID(String) - Static method in class net.cnri.dobj.DOClient: Resolves the given object identifier and returns the repository that hosts the object.
Resources - Class in net.cnri.apps.dogui.view.resources
Resources() - Constructor for class net.cnri.apps.dogui.view.resources.Resources: Default constructor that loads the English dictionary.
Resources(String) - Constructor for class net.cnri.apps.dogui.view.resources.Resources
respond(Bundle) - Method in class net.cnri.repository.android.EmptyCursor
responseToPrompt(String) - Method in class net.cnri.apps.doserver.SetupHelper
RestDataElement - Class in net.cnri.repository.rest
RestDataElement(RestDigitalObject, MemoryDataElement) - Constructor for class net.cnri.repository.rest.RestDataElement
RestDigitalObject - Class in net.cnri.repository.rest
RestDigitalObject(RestRepository, MemoryDigitalObject) - Constructor for class net.cnri.repository.rest.RestDigitalObject
RestRepository - Class in net.cnri.repository.rest: This is an implementation of Repository API used for connecting to RestRepository servlet using JSON over HTTP as the wire format.
RestRepository(String, String, String) - Constructor for class net.cnri.repository.rest.RestRepository
RESTServlet - Class in net.cnri.apps.doserver
RESTServlet(Main, ExecutorService, HTTPConnectionHandler) - Constructor for class net.cnri.apps.doserver.RESTServlet
result - Variable in class net.cnri.dobj.delegation.ResultWithTTL
result - Variable in class net.cnri.dobj.groups.ResultWithTTL
ResultWithTTL<T> - Class in net.cnri.dobj.delegation: A result together with a TTL in seconds.
ResultWithTTL(T, int) - Constructor for class net.cnri.dobj.delegation.ResultWithTTL
ResultWithTTL<T> - Class in net.cnri.dobj.groups: A result together with a TTL in seconds.
ResultWithTTL(T, int) - Constructor for class net.cnri.dobj.groups.ResultWithTTL
retrieveDetails() - Method in class net.cnri.apps.auditgui.TxnDetailWindow
RFC_2539_WELL_KNOWN_GROUP_2 - Static variable in class net.cnri.dobj.DOClientConnection: Pre-computed parameters for use with setEncryptionParameters on slow clients (e.g.
RIGHTS_DELEGATION_OBJECT_HDL_TYPE - Static variable in interface net.cnri.dobj.DOConstants
RIGHTS_ELEMENT - Static variable in class net.cnri.apps.doserver.Authorizer
RIGHTS_ELEMENT_ID - Static variable in interface net.cnri.dobj.DOConstants
ROTATE_DAILY - Static variable in class net.cnri.apps.doserver.ServerLog
ROTATE_MONTHLY - Static variable in class net.cnri.apps.doserver.ServerLog
ROTATE_NEVER - Static variable in class net.cnri.apps.doserver.ServerLog
ROTATE_WEEKLY - Static variable in class net.cnri.apps.doserver.ServerLog
RouterServlet - Class in net.cnri.repository.rest.servlet
RouterServlet() - Constructor for class net.cnri.repository.rest.servlet.RouterServlet
ruleType - Variable in class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
run() - Method in class net.cnri.apps.dogui.view.ConsolePanel
run() - Method in class net.cnri.apps.dogui.view.DepositWindow
run() - Method in class net.cnri.apps.doserver.AgentSignerThread
run() - Method in class net.cnri.apps.doserver.operators.LuceneIndexer

S

safeHTML(String) - Static method in class net.cnri.apps.doserver.HTTPConnectionHandler
savePreferences() - Method in class net.cnri.apps.dogui.controller.Main: Save the preferences table
saveSettingsForUser(DigitalObject) - Method in class net.cnri.apps.dogui.view.UserInfoPanel
saveToObject(DigitalObject) - Method in class net.cnri.do_api.EntityMap
scanHandles(ScanCallback) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Scan the database, calling a method in the specified callback for every handle in the database.
scanNAs(ScanCallback) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Scan the NA database, calling a method in the specified callback for every naming authority handle in the database.
search(String) - Method in class net.cnri.do_api.Repository
search(String, List<String>, List<String>, int, int) - Method in class net.cnri.do_api.Repository
search(String, List<String>, List<String>, int, int, boolean) - Method in class net.cnri.do_api.Repository
search(String, List<String>, List<String>, int, int, HeaderSet) - Method in class net.cnri.do_api.Repository
search(String, List<String>, List<String>, String, int, int) - Method in class net.cnri.do_api.Repository: Deprecated.
search(String, List<String>, List<String>, String, int, int, boolean) - Method in class net.cnri.do_api.Repository: Deprecated.
search(String, List<String>, List<String>, String, int, int, HeaderSet) - Method in class net.cnri.do_api.Repository: Deprecated.
search(String, HeaderSet) - Method in class net.cnri.do_api.Repository
search(Query, QueryParams) - Method in class net.cnri.repository.AbstractRepository
search(String) - Method in class net.cnri.repository.AbstractRepository: Deprecated.
search(Query) - Method in class net.cnri.repository.AbstractRepository
search(Query) - Method in class net.cnri.repository.android.EmbeddedRepository
search(Query) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
search(Query) - Method in class net.cnri.repository.bdbje.BdbjeRepository
search(Query) - Method in class net.cnri.repository.filesystem.FilesystemRepository
search(Query) - Method in class net.cnri.repository.layered.LayeredRepository
search(Query) - Method in class net.cnri.repository.memory.MemoryRepository
search(String, QueryParams) - Method in class net.cnri.repository.networked.NetworkedRepository
search(String) - Method in class net.cnri.repository.networked.NetworkedRepository: Deprecated.
search(Query, QueryParams) - Method in class net.cnri.repository.networked.NetworkedRepository
search(Query) - Method in class net.cnri.repository.networked.NetworkedRepository
search(Query, QueryParams) - Method in interface net.cnri.repository.Repository: Provides a CloseableIterator view of the digital objects accessible through this repository under search bounds defined in the Query object and the parameters defined in the QueryParams object.
search(Query) - Method in interface net.cnri.repository.Repository: Provides a CloseableIterator view of the digital objects accessible through this repository under search bounds defined in the Query object with default parameters.
search(String) - Method in interface net.cnri.repository.Repository: Deprecated.
Use Repository.search(Query,QueryParams) with first argument a RawQuery and second argument null.
search(String, QueryParams) - Method in class net.cnri.repository.rest.RestRepository
search(String) - Method in class net.cnri.repository.rest.RestRepository: Deprecated.
search(Query, QueryParams) - Method in class net.cnri.repository.rest.RestRepository
search(String) - Method in class net.cnri.repository.wrapper.RepositoryWrapper: Deprecated.
search(Query) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
search(Query, QueryParams) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
search(Query, QueryParams) - Method in class net.cnri.repository.wrapper.UnionRepository
search(Query) - Method in class net.cnri.repository.wrapper.UnionRepository
search(String) - Method in class net.cnri.repository.wrapper.UnionRepository: Deprecated.
SEARCH_ATTRIBUTE_PROJECTION - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
SEARCH_DEFAULT_PROJECTION - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
SEARCH_OP_ID - Static variable in class net.cnri.apps.dogui.controller.DNARetriever
SEARCH_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
SearchableMap - Class in net.cnri.apps.doserver.web
SearchableMap(Repository) - Constructor for class net.cnri.apps.doserver.web.SearchableMap
searchExcluding(Query, Collection<String>) - Method in class net.cnri.repository.android.EmbeddedRepository
searchExcluding(Query, Collection<String>) - Method in interface net.cnri.repository.layered.SupportsSearchExcluding
searchHandles(Query, QueryParams) - Method in class net.cnri.repository.AbstractRepository
searchHandles(String) - Method in class net.cnri.repository.AbstractRepository: Deprecated.
searchHandles(Query) - Method in class net.cnri.repository.AbstractRepository
searchHandles(Query) - Method in class net.cnri.repository.android.EmbeddedRepository
searchHandles(Query) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
searchHandles(Query) - Method in class net.cnri.repository.bdbje.BdbjeRepository
searchHandles(Query) - Method in class net.cnri.repository.filesystem.FilesystemRepository
searchHandles(Query) - Method in class net.cnri.repository.layered.LayeredRepository
searchHandles(Query) - Method in class net.cnri.repository.memory.MemoryRepository
searchHandles(String, QueryParams) - Method in class net.cnri.repository.networked.NetworkedRepository
searchHandles(String) - Method in class net.cnri.repository.networked.NetworkedRepository: Deprecated.
searchHandles(Query, QueryParams) - Method in class net.cnri.repository.networked.NetworkedRepository
searchHandles(Query) - Method in class net.cnri.repository.networked.NetworkedRepository
searchHandles(Query, QueryParams) - Method in interface net.cnri.repository.Repository: Provides a CloseableIterator view of the digital objects handles accessible through this repository under search bounds defined in the Query object and the parameters defined in the QueryParams object.
searchHandles(Query) - Method in interface net.cnri.repository.Repository: Provides a CloseableIterator view of the digital objects handles accessible through this repository under search bounds defined in the Query object with default parameters.
searchHandles(String) - Method in interface net.cnri.repository.Repository: Deprecated.
Use Repository.searchHandles(Query,QueryParams) with first argument a RawQuery and second argument null.
searchHandles(String, QueryParams) - Method in class net.cnri.repository.rest.RestRepository
searchHandles(String) - Method in class net.cnri.repository.rest.RestRepository: Deprecated.
searchHandles(Query, QueryParams) - Method in class net.cnri.repository.rest.RestRepository
searchHandles(String) - Method in class net.cnri.repository.wrapper.RepositoryWrapper: Deprecated.
searchHandles(Query) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
searchHandles(Query, QueryParams) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
searchHandles(Query, QueryParams) - Method in class net.cnri.repository.wrapper.UnionRepository
searchHandles(Query) - Method in class net.cnri.repository.wrapper.UnionRepository
searchHandles(String) - Method in class net.cnri.repository.wrapper.UnionRepository: Deprecated.
searchHandlesExcluding(Query, Collection<String>) - Method in class net.cnri.repository.android.EmbeddedRepository
searchHandlesExcluding(Query, Collection<String>) - Method in interface net.cnri.repository.layered.SupportsSearchExcluding
searchMapping(String) - Method in class net.cnri.repository.AbstractRepository: Deprecated.
searchMapping(String) - Method in class net.cnri.repository.networked.NetworkedRepository: Deprecated.
searchMapping(String) - Method in interface net.cnri.repository.Repository: Deprecated.
searchMapping(String) - Method in class net.cnri.repository.wrapper.RepositoryWrapper: Deprecated.
searchMapping(String) - Method in class net.cnri.repository.wrapper.UnionRepository: Deprecated.
SearchResult - Class in net.cnri.do_api
SearchResult() - Constructor for class net.cnri.do_api.SearchResult
SearchResult.Element - Class in net.cnri.do_api
SearchResult.Element(String) - Constructor for class net.cnri.do_api.SearchResult.Element
SearchResultInfoWindow - Class in net.cnri.apps.dogui.view
SearchResultInfoWindow(JComponent, AdminToolUI, DOSearchResult, DigitalObject) - Constructor for class net.cnri.apps.dogui.view.SearchResultInfoWindow
SearchResultsList - Class in net.cnri.apps.dogui.view
SearchResultsList(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.SearchResultsList
SearchResultsList.DateComparator - Class in net.cnri.apps.dogui.view
SearchResultsList.DateComparator() - Constructor for class net.cnri.apps.dogui.view.SearchResultsList.DateComparator
SearchResultsList.NameComparator - Class in net.cnri.apps.dogui.view
SearchResultsList.NameComparator() - Constructor for class net.cnri.apps.dogui.view.SearchResultsList.NameComparator
SearchResultsList.TypeComparator - Class in net.cnri.apps.dogui.view
SearchResultsList.TypeComparator() - Constructor for class net.cnri.apps.dogui.view.SearchResultsList.TypeComparator
SearchResultsView - Class in net.cnri.apps.dogui.view
SearchResultsView(AdminToolUI, SearchWindow) - Constructor for class net.cnri.apps.dogui.view.SearchResultsView
SearchResultView - Class in net.cnri.apps.dogui.view
SearchResultView() - Constructor for class net.cnri.apps.dogui.view.SearchResultView
SearchWindow - Class in net.cnri.apps.dogui.view
SearchWindow(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.SearchWindow
SecretKeyAuthentication - Class in net.cnri.dobj: A PKAuthentication object uses a secret key to prove our identity.
SecretKeyAuthentication(String, byte[]) - Constructor for class net.cnri.dobj.SecretKeyAuthentication: Construct an authentication object that uses the given private key to prove that we are the entity identified by myID.
segmentRule(String) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
serialize(Throwable) - Static method in class net.cnri.repository.android.ExceptionSerializer
serializeBundleAsString(Bundle) - Static method in class net.cnri.repository.android.Util
serializeBundleAsUriComponent(Bundle) - Static method in class net.cnri.repository.android.Util
SERIALIZED_ENCODING - Static variable in class net.cnri.do_api.Repository
serializeObject(String, OutputStream) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Serialize the entire object using the given format to the given stream
serializeObject(String, String, OutputStream) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Write the entire object into the given OutputStream in the given format
serializeObject(String, String, OutputStream) - Method in interface net.cnri.apps.doserver.Storage: Write the entire object into the given OutputStream in the given format
serializeObject(String, OutputStream) - Method in interface net.cnri.dobj.StorageProxy: Serialize the entire object using the given format to the given stream
SERVER_ADMIN_KEY - Static variable in class net.cnri.apps.doserver.Main
SERVER_ERROR - Static variable in exception net.cnri.dobj.DOException
SERVER_ID_KEY - Static variable in class net.cnri.apps.doserver.Main
SERVER_INFO_FILE - Static variable in class net.cnri.apps.doserver.Main
ServerClassLoader - Class in net.cnri.apps.doserver: Classloader which looks for classes and resources first in the server directory (and its classes and lib subdirectories).
ServerClassLoader(File) - Constructor for class net.cnri.apps.doserver.ServerClassLoader
ServerConnection - Class in net.cnri.dobj.emcompat: Repository connection object.
ServerConnection(String) - Constructor for class net.cnri.dobj.emcompat.ServerConnection: Opens a connection to the repository
serveRequests() - Method in class net.cnri.apps.doserver.Main
ServerLog - Class in net.cnri.apps.doserver: Object that writes information to access and error log files.
ServerLog(File, String, boolean, int) - Constructor for class net.cnri.apps.doserver.ServerLog: Construct a log handler to write to a log file with the given name under the specified directory.
service(HttpServletRequest, HttpServletResponse) - Method in class net.cnri.apps.doserver.HTTPConnectionHandler
SERVICE_ID_KEY - Static variable in class net.cnri.apps.doserver.Main
ServletRepository - Class in net.cnri.repository.servlet: Deprecated.
ServletRepository(Main, HttpServletRequest, DOAuthentication) - Constructor for class net.cnri.repository.servlet.ServletRepository: Deprecated.
ServletRepository(Main, HttpServletRequest, String, byte[]) - Constructor for class net.cnri.repository.servlet.ServletRepository: Deprecated.
ServletUtil - Class in net.cnri.repository.rest.servlet
ServletUtil() - Constructor for class net.cnri.repository.rest.servlet.ServletUtil
SET_ATTRIBUTES_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
setAccelerator(KeyStroke) - Method in class net.cnri.apps.dogui.view.HDLAction
setAccelerator(String) - Method in class net.cnri.apps.dogui.view.HDLAction
setAtt(String, String) - Method in class net.cnri.do_api.SearchResult.Element
setAtt(String, String) - Method in class net.cnri.do_api.SearchResult
SetAttachedExe(String, String, String, String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Set the executable for a servlet or signature disseminator
SetAttachments(String, String, Attachment[]) - Method in class net.cnri.dobj.emcompat.ServerConnection: Set attachments for a digital object disseminator
setAttribute(String, String) - Method in class net.cnri.do_api.DataElement: Associates the given attributeValue with the given attributeName for this object.
setAttribute(String, String) - Method in class net.cnri.do_api.DigitalObject: Associates the given attributeValue with the given attributeName for this object.
setAttribute(String, String) - Method in class net.cnri.do_api.EntityMap.Entity: Sets the value that is associated with the given attribute within this entity
setAttribute(String, String, String, String) - Method in class net.cnri.repository.AbstractDirectRepository
setAttribute(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
setAttribute(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
setAttribute(String, String, String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
setAttribute(String, String) - Method in class net.cnri.repository.bdbje.BdbjeDataElement
setAttribute(String, String) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
setAttribute(String, String, String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
setAttribute(String, String) - Method in interface net.cnri.repository.DataElement: Sets a particular attribute.
setAttribute(String, String) - Method in interface net.cnri.repository.DigitalObject: Sets a particular attribute.
setAttribute(String, String, String, String) - Method in interface net.cnri.repository.DirectRepository: Sets a particular attribute.
setAttribute(String, String) - Method in class net.cnri.repository.filesystem.FilesystemDataElement
setAttribute(String, String) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
setAttribute(String, String) - Method in class net.cnri.repository.layered.LayeredDataElement
setAttribute(String, String) - Method in class net.cnri.repository.layered.LayeredDigitalObject
setAttribute(String, String, String, String) - Method in class net.cnri.repository.layered.LayeredRepository
setAttribute(String, String) - Method in class net.cnri.repository.memory.MemoryDataElement
setAttribute(String, String) - Method in class net.cnri.repository.memory.MemoryDigitalObject
setAttribute(String, String) - Method in class net.cnri.repository.networked.NetworkedDataElement
setAttribute(String, String) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
setAttribute(String, String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
setAttribute(String, String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
setAttribute(String, String) - Method in class net.cnri.repository.rest.RestDataElement
setAttribute(String, String) - Method in class net.cnri.repository.rest.RestDigitalObject
setAttribute(String, String) - Method in class net.cnri.repository.syncing.SyncingDataElement
setAttribute(String, String) - Method in class net.cnri.repository.syncing.SyncingDigitalObject
setAttribute(String, String, String, String) - Method in class net.cnri.repository.syncing.SyncingRepository
setAttribute(String, String) - Method in class net.cnri.repository.wrapper.DataElementWrapper
setAttribute(String, String) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
setAttribute(String, String, String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
setAttributes(String, String, HeaderSet, HeaderSet, long) - Method in class net.cnri.apps.doserver.AbstractStorage
setAttributes(HeaderSet) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Set the given key-value attributes in the object, replacing any existing attributes that have the same keys.
setAttributes(String, String, HeaderSet, boolean, long) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Add the given key-value attribute to the object, replacing any existing attribute that has the same key.
setAttributes(String, String, HeaderSet, boolean, long) - Method in interface net.cnri.apps.doserver.Storage: Add the given key-value attribute to the object, replacing any existing attribute that has the same key.
setAttributes(String, String, HeaderSet, HeaderSet, long) - Method in interface net.cnri.apps.doserver.Storage: Version with enhanced logging (stores txnMetadata in transaction)
setAttributes(HeaderSet) - Method in class net.cnri.do_api.DataElement: Atomically set more than one attribute
setAttributes(HeaderSet) - Method in class net.cnri.do_api.DigitalObject: Atomically set more than one attribute
setAttributes(HeaderSet) - Method in interface net.cnri.dobj.StorageProxy: Set the given key-value attributes in the object, replacing any existing attributes that have the same keys.
setAttributes(Map<String, String>) - Method in class net.cnri.repository.AbstractDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.AbstractDigitalObject
setAttributes(String, String, Map<String, String>) - Method in class net.cnri.repository.AbstractDirectRepository
setAttributes(Map<String, String>) - Method in class net.cnri.repository.android.sqlite.SQLiteDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
setAttributes(String, String, Map<String, String>) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
setAttributes(Map<String, String>) - Method in class net.cnri.repository.bdbje.BdbjeDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
setAttributes(String, String, Map<String, String>) - Method in class net.cnri.repository.bdbje.BdbjeRepository
setAttributes(Map<String, String>) - Method in interface net.cnri.repository.DataElement: Sets the value of multiple attributes.
setAttributes(Map<String, String>) - Method in interface net.cnri.repository.DigitalObject: Sets the value of multiple attributes.
setAttributes(String, String, Map<String, String>) - Method in interface net.cnri.repository.DirectRepository: Sets the value of multiple attributes.
setAttributes(Map<String, String>) - Method in class net.cnri.repository.filesystem.FilesystemDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
setAttributes(Map<String, String>) - Method in class net.cnri.repository.layered.LayeredDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.layered.LayeredDigitalObject
setAttributes(String, String, Map<String, String>) - Method in class net.cnri.repository.layered.LayeredRepository
setAttributes(Map<String, String>) - Method in class net.cnri.repository.memory.MemoryDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.memory.MemoryDigitalObject
setAttributes(Map<String, String>) - Method in class net.cnri.repository.networked.NetworkedDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
setAttributes(Map<String, String>) - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
setAttributes(Map<String, String>) - Method in class net.cnri.repository.rest.RestDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.rest.RestDigitalObject
setAttributes(Map<String, String>) - Method in class net.cnri.repository.syncing.SyncingDataElement
setAttributes(Map<String, String>) - Method in class net.cnri.repository.syncing.SyncingDigitalObject
setAttributes(String, String, Map<String, String>) - Method in class net.cnri.repository.syncing.SyncingRepository
setAttributes(Map<String, String>) - Method in class net.cnri.repository.wrapper.DataElementWrapper
setAttributes(Map<String, String>) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
setAttributes(String, String, Map<String, String>) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
setAuthentication(String, PrivateKey) - Method in class net.cnri.apps.doutilgui.AuthWindow: Set the public key authentication information for this window
setAutoRetrieveCredentials(boolean) - Method in class net.cnri.dobj.AbstractAuthentication: Sets whether or not this object will automatically retrieve the client's credentials from the client DO when getCredentials() is called.
setBounds(int, int, int, int) - Method in class net.cnri.apps.dogui.view.HandleValueRenderer
setCertExpirationInDays(long) - Method in class net.cnri.apps.cmdline.CertGenerator
setConfigVal(String, String) - Method in class net.cnri.apps.doserver.Main: Associate the given value with the given key in the configuration table
setConnectionMapping(Object, Object) - Method in interface net.cnri.dobj.DOOperationContext: Inserts an object into the connection-level information table.
setConnectionMapping(Object, Object) - Method in class net.cnri.dobj.DOServerConnection: Inserts an object into the connection-level information table.
setConnectionMapping(Object, Object) - Method in interface net.cnri.dobj.edo.EDOOperationContext: Inserts an object into the connection-level information table.
setConnectionMapping(Object, Object) - Method in interface net.cnri.repository.internal.Caller: Store arbitrary information for the caller across multiple operations.
setConnectionMapping(Object, Object) - Method in class net.cnri.repository.internal.InternalOperationContext
setConnectionMapping(Object, Object) - Method in class net.cnri.repository.internal.SimpleAuthenticatedCaller: Does nothing.
setContext(Context) - Method in class net.cnri.repository.android.EmbeddedDataElement
setContext(Context) - Method in class net.cnri.repository.android.EmbeddedDigitalObject
setContext(Context) - Method in class net.cnri.repository.android.EmbeddedRepository
setCreatedAndModifiedAttribute() - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
setCreatedAndModifiedAttribute() - Method in class net.cnri.repository.memory.MemoryDigitalObject
setCredentials(Certificate[]) - Method in class net.cnri.dobj.AbstractAuthentication
setDataElementByContext(String, String, InputStream) - Method in interface net.cnri.dobj.edo.EDOOperationContext: Store the data from the given input stream in the identified data element based on the given context ID.
SetDataStreamBytes(String, String, InputStream) - Method in class net.cnri.dobj.emcompat.ServerConnection: Sets bytes for a digital object data stream
SetDataStreamBytes(String, String, long, byte[], int) - Method in class net.cnri.dobj.emcompat.ServerConnection: Sets bytes for a digital object data stream
setDateCreated(long) - Method in class net.cnri.dobj.DOMetadata: Stores the date that the DO was most recently created.
setDateDeleted(long) - Method in class net.cnri.dobj.DOMetadata: Stores the date that the DO was most recently deleted.
setDefaultCryptoAlg(String) - Method in class net.cnri.dobj.GenericEncryption: Set the default encryption algorithm, subject to capability negotiation with the other side of the connection.
setDefaultMacAlg(String) - Method in class net.cnri.dobj.GenericEncryption: Set the default MAC algorithm, subject to capability negotiation with the other side of the connection.
setDefaultMode(String) - Method in class net.cnri.dobj.GenericEncryption: Set the default mode, subject to capability negotiation with the other side of the connection.
setDefaultPadding(String) - Method in class net.cnri.dobj.GenericEncryption: Set the default padding, subject to capability negotiation with the other side of the connection.
setElementAttributes(String, HeaderSet) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Set the given key-value attributes for the given element in the object, replacing any existing attributes that have the same keys.
setElementAttributes(String, HeaderSet) - Method in interface net.cnri.dobj.StorageProxy: Set the given key-value attributes for the given element in the object, replacing any existing attributes that have the same keys.
setElements(Map<String, SearchResult.Element>) - Method in class net.cnri.do_api.SearchResult
setEncryptAttributes(boolean) - Method in class net.cnri.apps.dogui.view.DepositWindow
setEncryptContent(boolean) - Method in class net.cnri.apps.dogui.view.DepositWindow
setEncryptFor(Object[]) - Method in class net.cnri.apps.dogui.view.DepositWindow
setEncryptionParameters(DHParameterSpec) - Static method in class net.cnri.dobj.DOClientConnection: Sets the Diffie-Hellman parameters to be used for encryption.
setExtraHandler(String, ActionListener) - Method in class net.cnri.apps.doutilgui.AuthWindow
setField(String, String) - Method in class net.cnri.do_api.SearchResult.Element
setField(String, String) - Method in class net.cnri.do_api.SearchResult
setFiles(File[]) - Method in class net.cnri.apps.dogui.view.DepositWindow
setFont(Font) - Method in class net.cnri.apps.dogui.view.util.JLinkLabel
setHaveNA(byte[], boolean) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Sets a flag indicating whether or not this server is responsible for the given naming authority.
setKeyRing(DOKeyRing) - Method in class net.cnri.apps.doserver.operators.DefaultIndexBuilder
setKeyRing(DOKeyRing) - Method in interface net.cnri.apps.doserver.operators.IndexBuilder: Sets the DOKeyRing which could be used by the index builder to index encrypted documents.
setKnowbotMapping(String, Object) - Method in class net.cnri.apps.doserver.Main: Set the given key-value mapping in the server-level table that knowbots can use to communicate.
setKnowbotUpdated(String, String, int) - Method in class net.cnri.apps.dogui.controller.Main: Stores the version of the given knowbot
setListAttribute(String, List<String>) - Method in class net.cnri.repository.highlevel.HighLevelDigitalObject: Concatenates the list of strings into a newline separated string and sets it on the attribute called "name"
setListener(DOConnectionListener) - Method in class net.cnri.dobj.DOConnection: Sets the listener that will be notified when new channels are opened.
setMessageType(String) - Method in class net.cnri.dobj.HeaderSet
setMnemonicKey(int) - Method in class net.cnri.apps.dogui.view.HDLAction
setModifiedAttribute() - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
setModifiedAttribute() - Method in class net.cnri.repository.memory.MemoryDigitalObject
setMPAtt(String, String) - Method in class net.cnri.do_api.SearchResult.Element
setName(String) - Method in class net.cnri.dobj.StreamPair
setNotes(String) - Method in class net.cnri.apps.dogui.view.DepositWindow
setNotificationUri(ContentResolver, Uri) - Method in class net.cnri.repository.android.EmptyCursor
setObject(DigitalObject, int) - Method in class net.cnri.apps.dogui.view.ShowObjectWindow
setObjectID(String) - Method in class net.cnri.do_api.SearchResult
setObjectID(String) - Method in class net.cnri.dobj.DOMetadata: Sets the identifier for the object to which this metadata applies.
setObjectInfo(DOMetadata) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Sets the metadata for the given digital object.
setObjectInfo(DOMetadata) - Method in interface net.cnri.apps.doserver.Storage: Sets the metadata for the object specified by the given DOMetadata.
setParameters(HeaderSet) - Method in class net.cnri.dobj.DESEncryption: Set up the parameters for the encryption/decryption process.
setParameters(HeaderSet) - Method in class net.cnri.dobj.GenericEncryption: Set up the parameters for the encryption/decryption process.
setPAtt(String, String) - Method in class net.cnri.do_api.SearchResult.Element
setProtocolTimeout(long) - Method in class net.cnri.dobj.DOConnection
setPullsOverwriteIfNewer(boolean) - Method in class net.cnri.repository.syncing.SyncingConfig
setReadableRule(DOPermissionEditor.DORule) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.PermissionComponent
setRepoID(String, String) - Method in class net.cnri.apps.dogui.view.AdminToolUI: Set the ID for the repository with the given role
setRepoID(String) - Method in class net.cnri.do_api.SearchResult
setRepositoryID(String) - Method in class net.cnri.apps.dogui.view.DepositWindow
setResolver(Resolver) - Static method in class net.cnri.dobj.DOConnection: Sets the singleton Resolver object
setRights(byte[]) - Method in class net.cnri.apps.dogui.view.DepositWindow: Set the rights/permissions for the objects being deposited.
setScore(String) - Method in class net.cnri.do_api.SearchResult
setSearch(DOSearch) - Method in class net.cnri.apps.dogui.view.BasicSearchView
setSearch(DOSearch) - Method in class net.cnri.apps.dogui.view.DetailedSearchView
setSecretKeyAuthentication(String, String) - Method in class net.cnri.apps.doutilgui.AuthWindow: Set the secret key authentication information for this window
setShortDescription(String) - Method in class net.cnri.apps.dogui.view.HDLAction
setShowProgress(boolean) - Method in class net.cnri.apps.dogui.view.SyncStatusView
setSingleRule(DOPermissionEditor.DORule) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.PermissionComponent
setStorageHint(String) - Method in class net.cnri.apps.dogui.view.DepositWindow
setSyncAllChanges(boolean) - Method in class net.cnri.repository.syncing.SyncingConfig
setSyncIntervalManager(SyncIntervalManager) - Method in class net.cnri.repository.syncing.SyncingConfig
setTag(String, String) - Method in class net.cnri.dobj.DOMetadata: Stores the given key-value pair as a tag along with this object.
setTargetObject(Object) - Method in class net.cnri.apps.dogui.view.HDLAction
setText(String) - Method in class net.cnri.do_api.SearchResult.Element
setThreadName(String) - Method in class net.cnri.apps.dogui.controller.DNASynchronizer: Set the name of the thread
setTransactionQueue(AbstractTransactionQueue) - Method in class net.cnri.apps.doserver.AbstractStorage
setTransactionQueue(AbstractTransactionQueue) - Method in interface net.cnri.apps.doserver.Storage: Set the transaction queue (used e.g.
setType(String) - Method in class net.cnri.repository.AbstractDataElement
setType(String) - Method in class net.cnri.repository.android.EmbeddedDataElement
setType(String) - Method in interface net.cnri.repository.DataElement: Sets the MIME type of the given data.
setType(String) - Method in class net.cnri.repository.layered.LayeredDataElement
setType(String) - Method in class net.cnri.repository.memory.MemoryDataElement
setType(String) - Method in class net.cnri.repository.networked.NetworkedDataElement
setType(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
setType(String) - Method in class net.cnri.repository.syncing.SyncingDataElement
setType(String) - Method in class net.cnri.repository.wrapper.DataElementWrapper
SetupHelper - Class in net.cnri.apps.doserver: This class runs a server object that accepts and handles incoming requests for operations on digital objects.
SetupHelper() - Constructor for class net.cnri.apps.doserver.SetupHelper
setupKnowbotDir(File) - Method in class net.cnri.apps.doserver.Main
setUseEncryption(boolean) - Method in class net.cnri.do_api.Repository: Sets whether or not the connection to this repository will be encrypted.
setUseEncryption(boolean) - Method in class net.cnri.dobj.DOClientConnection: Sets whether or not this connection will be encrypted.
setUseFolder(String) - Method in class net.cnri.apps.dogui.view.DepositWindow
setUseNewMethods(boolean) - Method in class net.cnri.dobj.emcompat.ServerConnection: Sets whether or not this API should use the newer, faster methods (when available) for accessing data elements and creating objects.
setUseSourceFolder() - Method in class net.cnri.apps.dogui.view.DepositWindow
setUseSubFolder() - Method in class net.cnri.apps.dogui.view.DepositWindow
setValue(String) - Method in class net.cnri.repository.util.Pair
setVisible(boolean) - Method in class net.cnri.apps.auditgui.TxnDetailWindow
setVisible(boolean) - Method in class net.cnri.apps.dogui.view.Console
setWritableRule(DOPermissionEditor.DORule) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.PermissionComponent
showAddressBook() - Method in class net.cnri.apps.dogui.view.AdminToolUI
showBasicSearch() - Method in class net.cnri.apps.dogui.view.SearchWindow
showConsoleWindow() - Method in class net.cnri.apps.dogui.view.AdminToolUI: Show the console window that shows error and informational messages
showDetailedSearch() - Method in class net.cnri.apps.dogui.view.SearchWindow
showErrorMessage(Component, String) - Method in class net.cnri.apps.dogui.view.AdminToolUI
showInfoMessage(Component, String) - Method in class net.cnri.apps.dogui.view.AdminToolUI
showItemDetails(DOSearchResult) - Method in class net.cnri.apps.dogui.view.SearchResultsList
showManageGroupsWindow() - Method in class net.cnri.apps.dogui.view.AdminToolUI: Show the window used to manage grouups of individuals
showNewSearchWindow() - Method in class net.cnri.apps.dogui.view.AdminToolUI
showNewSearchWindow(String) - Method in class net.cnri.apps.dogui.view.AdminToolUI
ShowObjectWindow - Class in net.cnri.apps.dogui.view
ShowObjectWindow(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.ShowObjectWindow
ShowObjectWindow.DragMouseAdapter - Class in net.cnri.apps.dogui.view
ShowObjectWindow.DragMouseAdapter() - Constructor for class net.cnri.apps.dogui.view.ShowObjectWindow.DragMouseAdapter
showSettingsWindow() - Method in class net.cnri.apps.dogui.view.AdminToolUI: Display the window with the client settings
shutdown() - Method in class net.cnri.apps.dogui.controller.Main
shutdown() - Method in class net.cnri.apps.dogui.view.AdminToolUI
shutdown(String[]) - Static method in class net.cnri.apps.doserver.Main
shutdown() - Method in class net.cnri.apps.doserver.Main
shutdown() - Method in class net.cnri.apps.doserver.operators.LuceneIndexer
shutdown() - Method in class net.cnri.apps.doserver.ReplicationManager
shutdown() - Method in class net.cnri.apps.doserver.ServerLog: Stop the flusher thread and close the logs.
shutdown() - Method in class net.cnri.apps.doserver.txnlog.AbstractTransactionQueue
shutdown() - Method in class net.cnri.apps.doserver.txnlog.ConcatenatedTransactionQueue
shutdown() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueue
shutdown() - Method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB
shutdown() - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Close the database and clean up
signChallenge(HeaderSet, HeaderSet) - Method in interface net.cnri.dobj.DOAuthentication: Signs the given challenge message and puts the result (including any required parameters) into the given HeaderSet object.
signChallenge(HeaderSet, HeaderSet) - Method in class net.cnri.dobj.PKAuthentication
signChallenge(HeaderSet, HeaderSet) - Method in class net.cnri.dobj.ProxiedAuthentication: Signs the given challenge message and puts the result (including any required parameters) into the given HeaderSet object.
signChallenge(HeaderSet, HeaderSet) - Method in class net.cnri.dobj.SecretKeyAuthentication
SIGNUP_ATT_PREFIX - Static variable in class net.cnri.apps.doserver.UserAccountServlet
SimpleAuthenticatedCaller - Class in net.cnri.repository.internal: A specification of a caller claiming no credentials (other than its own id) which is considered to be already authenticated.
SimpleAuthenticatedCaller(String) - Constructor for class net.cnri.repository.internal.SimpleAuthenticatedCaller: Constructs the instance.
size() - Method in class net.cnri.dobj.HeaderSet: Returns the number of headers
size() - Method in class net.cnri.repository.highlevel.AttributeMap
size() - Method in class net.cnri.repository.networked.HeaderSetPrefixMap
size() - Method in class net.cnri.repository.networked.MapFromHeaderSet
size() - Method in class net.cnri.repository.search.QueryResults
SIZE_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
skip(long) - Method in class net.cnri.repository.util.LimitedInputStream
smallButton(JButton) - Static method in class net.cnri.apps.dogui.view.DOViewPanel
SORT_BY_DATE - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
SORT_BY_NAME - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
SORT_BY_TYPE - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
sortBy(int) - Method in class net.cnri.apps.dogui.view.SearchResultsList
SortField - Class in net.cnri.repository.search: A specification of a field to be sorted.
SortField(String, boolean) - Constructor for class net.cnri.repository.search.SortField
splitOnUnbackslashedCommas(String) - Static method in class net.cnri.dobj.HeaderSet
SQLiteDataElement - Class in net.cnri.repository.android.sqlite
SQLiteDataElement(SQLiteDigitalObject, String, SQLiteRepository) - Constructor for class net.cnri.repository.android.sqlite.SQLiteDataElement
SQLiteDigitalObject - Class in net.cnri.repository.android.sqlite
SQLiteDigitalObject(SQLiteRepository, SQLiteDatabase, String) - Constructor for class net.cnri.repository.android.sqlite.SQLiteDigitalObject
SQLiteRepository - Class in net.cnri.repository.android.sqlite
SQLiteRepository(Context) - Constructor for class net.cnri.repository.android.sqlite.SQLiteRepository
SSL_PORT_KEY - Static variable in class net.cnri.apps.doserver.Main
StandardOperations - Class in net.cnri.apps.doserver.operators: Operator that provides simple digital object operations, like saving and retrieving object data elements, certificates, etc.
StandardOperations(Main, DelegationClient) - Constructor for class net.cnri.apps.doserver.operators.StandardOperations
StandardOperations - Class in net.cnri.knowbots.standardops: Operator that provides simple digital object operations, like saving and retrieving object data elements, certificates, etc.
StandardOperations() - Constructor for class net.cnri.knowbots.standardops.StandardOperations
start() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer
start() - Method in class net.cnri.repository.util.Timer
START_DATE_PARAM - Static variable in class net.cnri.apps.doserver.AuditHookImpl
startsWith(byte[], byte[]) - Static method in class net.cnri.repository.bdbje.BdbUtil
startSyncing(SyncingRepository) - Method in class net.cnri.repository.syncing.GenericSyncIntervalManager
startSyncing() - Method in class net.cnri.repository.syncing.SyncingRepository
startSyncing(SyncingRepository) - Method in class net.cnri.repository.syncing.SyncIntervalManager
StartWindow - Class in net.cnri.apps.doclient: Main class for a simple GUI that provides raw access to DO operations
StartWindow(DOClient) - Constructor for class net.cnri.apps.doclient.StartWindow
STATE_BROKEN - Static variable in class net.cnri.apps.dogui.controller.DNASynchronizer
STATE_RUNNING - Static variable in class net.cnri.apps.dogui.controller.DNASynchronizer
STATE_STOPPED - Static variable in class net.cnri.apps.dogui.controller.DNASynchronizer
stateUpdated(DNASynchronizer) - Method in interface net.cnri.apps.dogui.controller.SynchronizerStatusListener: Called when the state (running, stopped, etc) is changed.
STATIC_URI_PREFIX - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
statusUpdated(DNASynchronizer) - Method in interface net.cnri.apps.dogui.controller.SynchronizerStatusListener: Called when only the status (progress, message, etc) is changed
stop() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer
stop() - Method in class net.cnri.repository.util.Timer
stopServing() - Method in class net.cnri.apps.doserver.Main
stopSyncing() - Method in class net.cnri.repository.syncing.GenericSyncIntervalManager
stopSyncing() - Method in class net.cnri.repository.syncing.SyncingRepository
stopSyncing() - Method in class net.cnri.repository.syncing.SyncIntervalManager
Storage - Interface in net.cnri.apps.doserver: This interface specifies an interface to the back-end storage system for a registry.
STORAGE_CLASS_KEY - Static variable in class net.cnri.apps.doserver.Main
STORAGE_DIR_KEY - Static variable in class net.cnri.apps.doserver.Main
STORAGE_ERROR - Static variable in exception net.cnri.dobj.DOException
StorageProxy - Interface in net.cnri.dobj: StorageProxy objects provide an interface to the storage layer of a registry for a single object.
STORE_CREDENTIAL_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
STORE_DATA_OP_ID - Static variable in interface net.cnri.dobj.DOConstants
STORED_PASSWORDS_FILE - Static variable in class net.cnri.apps.doserver.Main
storeDataElement(String, String, InputStream, HeaderSet, boolean, long) - Method in class net.cnri.apps.doserver.AbstractStorage
storeDataElement(String, InputStream) - Method in class net.cnri.apps.doserver.ConcreteStorageProxy: Stores the bytes from the given input stream into the given data element for the object.
storeDataElement(String, String, InputStream, boolean, boolean) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Stores the data read from the given InputStream into the given data element for the object identified by objectID.
storeDataElement(String, String, InputStream, boolean, boolean, long) - Method in class net.cnri.apps.doserver.HashDirectoryStorage: Stores the data read from the given InputStream into the given data element for the object identified by objectID.
storeDataElement(String, String, InputStream, boolean, boolean) - Method in interface net.cnri.apps.doserver.Storage: Stores the data read from the given InputStream into the given data element for the object identified by objectID.
storeDataElement(String, String, InputStream, boolean, boolean, long) - Method in interface net.cnri.apps.doserver.Storage: Stores the data read from the given InputStream into the given data element for the object identified by objectID.
storeDataElement(String, String, InputStream, HeaderSet, boolean, long) - Method in interface net.cnri.apps.doserver.Storage: Version with enhanced logging (stores txnMetadata in transaction)
storeDataElement(String, InputStream) - Method in interface net.cnri.dobj.StorageProxy: Writes data from the given InputStream as the data element for the given object ID.
storePermissions(OutputStream) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor: Store the permissions from the GUI into the given output stream
storePermissionsInPreferences() - Method in class net.cnri.apps.dogui.view.DOPermissionEditor
StreamPair - Class in net.cnri.dobj: A StreamPair is a simple container that holds an associated InputStream and OutputStream
StreamPair(InputStream, OutputStream) - Constructor for class net.cnri.dobj.StreamPair
StreamPair(int, InputStream, OutputStream) - Constructor for class net.cnri.dobj.StreamPair
StringEncoding - Class in net.cnri.repository.util
StringEncoding() - Constructor for class net.cnri.repository.util.StringEncoding
stringFromStream(InputStream) - Static method in class net.cnri.apps.doserver.web.VelocityUtil
StringPairListMap - Class in net.cnri.repository.util: A thin wrapper around an ArrayList of String pairs, allowing it a Map implementation, such as needed for Digital Object attributes.
StringPairListMap() - Constructor for class net.cnri.repository.util.StringPairListMap
subchain - Variable in class net.cnri.dobj.delegation.DelegationChain
subchain - Variable in class net.cnri.dobj.groups.GroupChain
SUBGROUP_CERT_TYPE_PREFIX - Static variable in class net.cnri.cert.CertUtil: Prefix of handle value types indicating subgrouping; append the supergroup handle
subgroupChain - Variable in class net.cnri.cert.CertUtil.GroupChain
SUCCESS_RESPONSE_CODE - Static variable in class net.cnri.dobj.DOConnection
SupportsFastCopyForLayeredRepo - Interface in net.cnri.repository.layered
SupportsSearchExcluding - Interface in net.cnri.repository.layered
SYNC_QUERY_ATT - Static variable in class net.cnri.apps.dogui.view.AdminToolUI
SYNC_UNAVAILABLE - Static variable in class net.cnri.repository.Repositories: Deprecated.
Prefer Constants.ELEMENT_ATTRIBUTE_DATA_NOT_PRESENT
SynchronizerStatusListener - Interface in net.cnri.apps.dogui.controller
SyncingConfig - Class in net.cnri.repository.syncing
SyncingConfig() - Constructor for class net.cnri.repository.syncing.SyncingConfig
SyncingDataElement - Class in net.cnri.repository.syncing
SyncingDataElement(DigitalObject, DataElement) - Constructor for class net.cnri.repository.syncing.SyncingDataElement
SyncingDigitalObject - Class in net.cnri.repository.syncing
SyncingDigitalObject(SyncingRepository, DigitalObject) - Constructor for class net.cnri.repository.syncing.SyncingDigitalObject
SyncingRepository - Class in net.cnri.repository.syncing: Given two other repositories, a local and a remote this repository manages pulling objects from remote to local and pushing objects from local to remote.
SyncingRepository(Repository, DirectRepository, SyncingConfig) - Constructor for class net.cnri.repository.syncing.SyncingRepository
SyncingRepository.ModifiedSinceLastSyncQuery - Class in net.cnri.repository.syncing
SyncingRepository.ModifiedSinceLastSyncQuery(SyncingRepository) - Constructor for class net.cnri.repository.syncing.SyncingRepository.ModifiedSinceLastSyncQuery
SyncIntervalManager - Class in net.cnri.repository.syncing
SyncIntervalManager() - Constructor for class net.cnri.repository.syncing.SyncIntervalManager
syncNow(String) - Method in class net.cnri.repository.android.ClientRepository
syncNow() - Method in class net.cnri.repository.syncing.SyncingRepository
syncObject(DigitalObject, ClientRepository.Destination, ClientRepository.SyncPriority, boolean) - Method in class net.cnri.repository.android.ClientRepository
syncObject(String, ClientRepository.SyncPriority, boolean) - Method in class net.cnri.repository.android.ClientRepository: Given a DigitalObject id sets the necessary attributes on this object to indicate that it should be synced.
syncObject(String, ClientRepository.Destination, ClientRepository.SyncPriority, boolean) - Method in class net.cnri.repository.android.ClientRepository
SyncStatusView - Class in net.cnri.apps.dogui.view
SyncStatusView(AdminToolUI, DNASynchronizer, String) - Constructor for class net.cnri.apps.dogui.view.SyncStatusView

T

TEMPLATE_PARAM - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
TestMM - Class in net.cnri.apps.test: Class used for testing the multi-master replication system and general load-handling capacity of a repository system.
TestMM(DOAuthentication) - Constructor for class net.cnri.apps.test.TestMM
throwCause() - Method in exception net.cnri.repository.UncheckedRepositoryException
TimeHelper - Class in net.cnri.debug
TimeHelper(String) - Constructor for class net.cnri.debug.TimeHelper
TimeHelper() - Constructor for class net.cnri.debug.TimeHelper
Timer - Class in net.cnri.repository.util
Timer() - Constructor for class net.cnri.repository.util.Timer
Timer(String) - Constructor for class net.cnri.repository.util.Timer
timestamp - Variable in class net.cnri.apps.doserver.txnlog.Transaction
TITLE_ATTRIBUTE - Static variable in interface net.cnri.dobj.DOConstants
TK_ACTION - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
TK_ACTUALTIME - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
TK_ATTRIBUTES - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
TK_DATAELEMENT - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
TK_METADATA - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
TK_OBJECTID - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
TK_TIMESTAMP - Static variable in class net.cnri.apps.doserver.txnlog.Transaction
toBson(DigitalObject) - Static method in class net.cnri.repository.util.BsonUtil
toByteArray(long) - Static method in class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB
toByteArray(int) - Static method in class net.cnri.repository.bdbje.BdbUtil
toByteArray(InputStream) - Static method in class net.cnri.repository.util.BsonUtil
toDOViews(List<DigitalObject>) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
toDOViews(List<DigitalObject>, List<String>) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
toDOViews(List<DigitalObject>) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
toDOViews(List<DigitalObject>, List<String>) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
toggleAllLinkColor - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
toHandleAuth() - Method in interface net.cnri.dobj.DOAuthentication: Returns this authentication in a form that will work with handle system administration.
toHandleAuth() - Method in class net.cnri.dobj.PKAuthentication: Returns this authentication in a form that will work with handle system administration.
toHandleAuth() - Method in class net.cnri.dobj.ProxiedAuthentication: Returns this authentication in a form that will work with handle system administration.
toHandleAuth() - Method in class net.cnri.dobj.SecretKeyAuthentication: Returns this authentication in a form that will work with handle system administration.
toJSON(Repository) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer: Given a Repository this method will return a JSON String that represents all the object in the Repository.
toJSON(Repository, List<String>) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer: Given a Repository this method will return a JSON String that represents all the object in the Repository.
toJSON(DigitalObject) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer: Given a single DigitalObject this method will return a JSON String that represents that object.
toJSON(DigitalObject, List<String>) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer: Given a Repository this method will return a JSON String that the object in the Repository.
toJSON(List<DigitalObject>) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer: Given a list of DigitalObjects this method will return a JSON String that represents those objects.
toJSON(List<DigitalObject>, List<String>) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer: Given a list of DigitalObjects this method will return a JSON String that represents those objects.
toJSON(Repository) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2: Given a Repository this method will return a JSON String that represents all the object in the Repository.
toJSON(Repository, List<String>) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2: Given a Repository this method will return a JSON String that represents all the object in the Repository.
toJSON(DigitalObject) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2: Given a single DigitalObject this method will return a JSON String that represents that object.
toJSON(DigitalObject, List<String>) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2: Given a Repository this method will return a JSON String that the object in the Repository.
toJSON(List<DigitalObject>) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2: Given a list of DigitalObjects this method will return a JSON String that represents those objects.
toJSON(List<DigitalObject>, List<String>) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2: Given a list of DigitalObjects this method will return a JSON String that represents those objects.
toString() - Method in class net.cnri.apps.dogui.controller.DNASynchronizer
toString() - Method in class net.cnri.apps.dogui.controller.DOSearch.SearchAttribute
toString() - Method in class net.cnri.apps.dogui.controller.DOSearch
toString() - Method in class net.cnri.apps.dogui.controller.DOSearchResult
toString() - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
toString() - Method in class net.cnri.apps.doserver.Authorizer.AuthorizationInfo
toString() - Method in class net.cnri.apps.doserver.DOServerOperationContext: Return a String description of this operation
toString() - Method in class net.cnri.apps.doserver.HashDirectoryStorage
toString() - Method in class net.cnri.apps.doserver.InternalRepository
toString() - Method in class net.cnri.apps.doserver.txnlog.Transaction
toString() - Method in class net.cnri.do_api.DataElement
toString() - Method in class net.cnri.do_api.DigitalObject: Returns a nicely formatted label for this object
toString() - Method in class net.cnri.do_api.EntityMap.Entity
toString() - Method in class net.cnri.do_api.Repository
toString() - Method in class net.cnri.dobj.DOConnection
toString() - Method in exception net.cnri.dobj.DOException
toString() - Method in class net.cnri.dobj.DOMetadata
toString() - Method in class net.cnri.dobj.DOServerInfo
toString() - Method in class net.cnri.dobj.GenericEncryption
toString() - Method in class net.cnri.dobj.HeaderItem
toString() - Method in class net.cnri.dobj.HeaderSet
toString() - Method in class net.cnri.dobj.PKAuthentication
toString() - Method in class net.cnri.dobj.SecretKeyAuthentication
toString() - Method in class net.cnri.dobj.StreamPair
toString() - Method in class net.cnri.repository.bdbje.BdbjeRepository
toString() - Method in class net.cnri.repository.search.BooleanClause
toString() - Method in class net.cnri.repository.search.BooleanQuery
toString() - Method in class net.cnri.repository.util.Timer
track(DigitalObject) - Method in class net.cnri.repository.ref.DigitalObjectReferenceCounter: Track a reference to the given DigitalObject.
track(DataElement) - Method in class net.cnri.repository.ref.DigitalObjectReferenceCounter: Track a reference to the given DataElement.
Transaction - Class in net.cnri.apps.doserver.txnlog: Class that holds the information known about a single transaction on a handle server.
Transaction(HeaderSet) - Constructor for class net.cnri.apps.doserver.txnlog.Transaction
Transaction(byte, String, long) - Constructor for class net.cnri.apps.doserver.txnlog.Transaction
Transaction(byte, String, long, String) - Constructor for class net.cnri.apps.doserver.txnlog.Transaction
transactionAdded(Transaction) - Method in interface net.cnri.apps.doserver.txnlog.TransactionQueueListener
TransactionCallback - Interface in net.cnri.apps.doserver.txnlog: Interface used to define objects that want to receive the streamed results from RetrieveTxnResponse messages.
TransactionQueue - Class in net.cnri.apps.doserver.txnlog: Class responsible for keeping track of the different transaction queue files.
TransactionQueue(File) - Constructor for class net.cnri.apps.doserver.txnlog.TransactionQueue
TransactionQueue.QueueScanner - Class in net.cnri.apps.doserver.txnlog
TransactionQueueBerkeleyDB - Class in net.cnri.apps.doserver.txnlog: Class responsible for keeping track of the transactions.
TransactionQueueBerkeleyDB(File) - Constructor for class net.cnri.apps.doserver.txnlog.TransactionQueueBerkeleyDB
TransactionQueueBerkeleyDB.QueueScanner - Class in net.cnri.apps.doserver.txnlog
TransactionQueueListener - Interface in net.cnri.apps.doserver.txnlog
ttl - Variable in class net.cnri.dobj.delegation.ResultWithTTL
ttl - Variable in class net.cnri.dobj.groups.ResultWithTTL
TXN_ID_PARAM - Static variable in class net.cnri.apps.doserver.AuditHookImpl
TXN_PART_DATETIME - Static variable in class net.cnri.apps.doserver.AuditHookImpl
TXN_PART_HEADERS - Static variable in class net.cnri.apps.doserver.AuditHookImpl
TXN_PART_INPUT - Static variable in class net.cnri.apps.doserver.AuditHookImpl
TXN_PART_OUTPUT - Static variable in class net.cnri.apps.doserver.AuditHookImpl
TXN_PART_PARAM - Static variable in class net.cnri.apps.doserver.AuditHookImpl
TXN_TYPE_ADD_OBJ - Static variable in class net.cnri.apps.doserver.ObjectSyncer
TXN_TYPE_ADD_OBJ - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
TXN_TYPE_ADD_OBJ - Static variable in class net.cnri.apps.doserver.ReplicationManager
TXN_TYPE_ATT_DELETE - Static variable in class net.cnri.apps.doserver.ObjectSyncer
TXN_TYPE_ATT_DELETE - Static variable in class net.cnri.apps.doserver.ReplicationManager
TXN_TYPE_ATT_UPDATE - Static variable in class net.cnri.apps.doserver.ObjectSyncer
TXN_TYPE_ATT_UPDATE - Static variable in class net.cnri.apps.doserver.ReplicationManager
TXN_TYPE_COMMENT - Static variable in class net.cnri.apps.doserver.ObjectSyncer
TXN_TYPE_COMMENT - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
TXN_TYPE_COMMENT - Static variable in class net.cnri.apps.doserver.ReplicationManager
TXN_TYPE_DEL_ELEMENT - Static variable in class net.cnri.apps.doserver.ObjectSyncer
TXN_TYPE_DEL_ELEMENT - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
TXN_TYPE_DEL_ELEMENT - Static variable in class net.cnri.apps.doserver.ReplicationManager
TXN_TYPE_DEL_OBJ - Static variable in class net.cnri.apps.doserver.ObjectSyncer
TXN_TYPE_DEL_OBJ - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
TXN_TYPE_DEL_OBJ - Static variable in class net.cnri.apps.doserver.ReplicationManager
TXN_TYPE_LOGGED_UPDATE - Static variable in class net.cnri.apps.doserver.ObjectSyncer
TXN_TYPE_LOGGED_UPDATE - Static variable in class net.cnri.apps.doserver.ReplicationManager
TXN_TYPE_UPDATE_ELEMENT - Static variable in class net.cnri.apps.doserver.ObjectSyncer
TXN_TYPE_UPDATE_ELEMENT - Static variable in class net.cnri.apps.doserver.operators.LuceneIndexer
TXN_TYPE_UPDATE_ELEMENT - Static variable in class net.cnri.apps.doserver.ReplicationManager
TxnDetailWindow - Class in net.cnri.apps.auditgui: This class will show the details for an entry (aka transaction or txn) in a repositories audit log.
TxnDetailWindow(DOClient, String, String) - Constructor for class net.cnri.apps.auditgui.TxnDetailWindow
TxnLogMigrationTool - Class in net.cnri.apps.doserver.txnlog
TxnLogMigrationTool() - Constructor for class net.cnri.apps.doserver.txnlog.TxnLogMigrationTool
TYPE_ATTRIBUTE - Static variable in class net.cnri.do_api.EntityMap

U

UNABLE_TO_LOCATE_OBJECT_ERROR - Static variable in exception net.cnri.dobj.DOException
UncheckedRepositoryException - Exception in net.cnri.repository: Unchecked wrapper for Repository exceptions.
UncheckedRepositoryException(RepositoryException) - Constructor for exception net.cnri.repository.UncheckedRepositoryException
unescapeURLTxt(byte[], int, int) - Static method in class net.cnri.dobj.HeaderSet
unescapeURLTxt(String) - Static method in class net.cnri.dobj.HeaderSet
union(List<Set<String>>) - Static method in class net.cnri.repository.util.CollectionUtil
UnionRepository - Class in net.cnri.repository.wrapper
UnionRepository(Repository...) - Constructor for class net.cnri.repository.wrapper.UnionRepository
UnionRepository(List<Repository>) - Constructor for class net.cnri.repository.wrapper.UnionRepository
unlock() - Method in class net.cnri.repository.filesystem.FilesystemRepository
unlock(String) - Method in class net.cnri.repository.syncing.SyncingRepository
unregisterContentObserver(ContentObserver) - Method in class net.cnri.repository.android.EmptyCursor
unregisterDataSetObserver(DataSetObserver) - Method in class net.cnri.repository.android.EmptyCursor
UP_TRIANGLE - Static variable in class net.cnri.apps.dogui.view.DOImages
update(Uri, ContentValues, String, String[]) - Method in class net.cnri.repository.android.ProviderClientProxy
UPDATE_OP - Static variable in class net.cnri.apps.test.IndexTest
updateModification(long) - Method in class net.cnri.dobj.DOMetadata
updateValue(byte[], HandleValue[]) - Method in class net.cnri.apps.hdlstorage.HDLCalculatedStorage: Replace the current values for the given handle with new values.
usageAndExit() - Static method in class net.cnri.apps.sample.DOExample
USE_IDENTITY_KEY - Static variable in class net.cnri.apps.doserver.Authorizer
USE_REPOSITORY_ID - Static variable in class net.cnri.apps.doserver.Authorizer
USER_EMAIL_ATTRIBUTE - Static variable in class net.cnri.apps.doserver.UserAccountServlet
USER_MANAGEMENT_PATH_PREFIX - Static variable in class net.cnri.apps.doserver.UserAccountServlet
UserAccountServlet - Class in net.cnri.apps.doserver
UserAccountServlet(Main, ExecutorService, HTTPConnectionHandler) - Constructor for class net.cnri.apps.doserver.UserAccountServlet
useRepoID() - Method in class net.cnri.apps.doserver.Authorizer.AuthorizationInfo: Return true if the authorization rule specifies that the operation should be forwarded using the repository's credentials.
UserInfoPanel - Class in net.cnri.apps.dogui.view
UserInfoPanel(AdminToolUI) - Constructor for class net.cnri.apps.dogui.view.UserInfoPanel
Util - Class in net.cnri.repository.android
Util() - Constructor for class net.cnri.repository.android.Util

V

VALUE - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
VALUE - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
VALUE_PROJECTION - Static variable in class net.cnri.repository.android.Provider.AttributeColumns
valueOf(String) - Static method in enum net.cnri.repository.android.ClientRepository.Destination: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.cnri.repository.android.ClientRepository.SyncPriority: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.cnri.repository.rest.servlet.RequestPath.Type: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.cnri.repository.search.BooleanClause.Occur: Returns the enum constant of this type with the specified name.
valueOnlyColumns - Static variable in class net.cnri.repository.android.sqlite.SQLiteRepository
values() - Static method in enum net.cnri.repository.android.ClientRepository.Destination: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.cnri.repository.android.ClientRepository.SyncPriority: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Method in class net.cnri.repository.highlevel.AttributeMap
values() - Method in class net.cnri.repository.networked.MapFromHeaderSet
values() - Static method in enum net.cnri.repository.rest.servlet.RequestPath.Type: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.cnri.repository.search.BooleanClause.Occur: Returns an array containing the constants of this enum type, in the order they are declared.
VelocityUtil - Class in net.cnri.apps.doserver.web
VelocityUtil() - Constructor for class net.cnri.apps.doserver.web.VelocityUtil
verifyDataElement(String) - Method in class net.cnri.do_api.DigitalObject: Verifies whether or not the data element with the given name exists within this object
verifyDataElement(String) - Method in class net.cnri.repository.AbstractDigitalObject
verifyDataElement(String, String) - Method in class net.cnri.repository.AbstractDirectRepository
verifyDataElement(String) - Method in class net.cnri.repository.android.EmbeddedDigitalObject
verifyDataElement(String) - Method in class net.cnri.repository.android.sqlite.SQLiteDigitalObject
verifyDataElement(String, String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
verifyDataElement(String) - Method in class net.cnri.repository.bdbje.BdbjeDigitalObject
verifyDataElement(String, String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
verifyDataElement(String) - Method in interface net.cnri.repository.DigitalObject: Verifies whether a data element with the given name exists within this digital object
verifyDataElement(String, String) - Method in interface net.cnri.repository.DirectRepository: Verifies whether a data element with the given name exists within this digital object
verifyDataElement(String) - Method in class net.cnri.repository.filesystem.FilesystemDigitalObject
verifyDataElement(String) - Method in class net.cnri.repository.layered.LayeredDigitalObject
verifyDataElement(String, String) - Method in class net.cnri.repository.layered.LayeredRepository
verifyDataElement(String) - Method in class net.cnri.repository.memory.MemoryDigitalObject
verifyDataElement(String) - Method in class net.cnri.repository.networked.NetworkedDigitalObject
verifyDataElement(String) - Method in class net.cnri.repository.networked.NetworkedSearchResultDigitalObject
verifyDataElement(String) - Method in class net.cnri.repository.rest.RestDigitalObject
verifyDataElement(String) - Method in class net.cnri.repository.wrapper.DigitalObjectWrapper
verifyDataElement(String, String) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
verifyDigitalObject(String) - Method in class net.cnri.do_api.Repository: Verifies that the specified digital object exists in the current repository
VerifyDigitalObject(String) - Method in class net.cnri.dobj.emcompat.ServerConnection: Verify a digital object exists in a repository
verifyDigitalObject(String) - Method in class net.cnri.repository.AbstractRepository
verifyDigitalObject(String) - Method in class net.cnri.repository.android.EmbeddedRepository
verifyDigitalObject(String) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
verifyDigitalObject(String) - Method in class net.cnri.repository.bdbje.BdbjeRepository
verifyDigitalObject(String) - Method in class net.cnri.repository.filesystem.FilesystemRepository
verifyDigitalObject(String) - Method in class net.cnri.repository.layered.LayeredRepository
verifyDigitalObject(String) - Method in class net.cnri.repository.memory.MemoryRepository
verifyDigitalObject(String) - Method in class net.cnri.repository.networked.NetworkedRepository
verifyDigitalObject(String) - Method in interface net.cnri.repository.Repository: Verifies whether a digital object with the given identifier can be accessed via this repository.
verifyDigitalObject(String) - Method in class net.cnri.repository.rest.RestRepository
verifyDigitalObject(String) - Method in class net.cnri.repository.wrapper.RepositoryWrapper
verifyDigitalObject(String) - Method in class net.cnri.repository.wrapper.UnionRepository
verifyID(String, String) - Method in class net.cnri.apps.doserver.SetupHelper
verifyPassword(String, VerifyAuthRequest) - Static method in class net.cnri.dobj.DOServerConnection
verifyPassword(String) - Method in class net.cnri.repository.util.HashAndSalt
Version - Class in net.cnri.apps.doserver
Version() - Constructor for class net.cnri.apps.doserver.Version
version - Static variable in class net.cnri.apps.doserver.Version
VERSION_ATT - Static variable in class net.cnri.apps.doserver.Main
VIEW_MODE - Static variable in interface net.cnri.apps.dogui.view.ViewConstants
ViewConstants - Interface in net.cnri.apps.dogui.view
viewHeaderColor1 - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
viewHeaderColor2 - Static variable in class net.cnri.apps.dogui.view.SearchResultsList
viewObject(String) - Method in class net.cnri.apps.dogui.view.MainWindow
viewObject(DigitalObject) - Method in class net.cnri.apps.dogui.view.MainWindow
visitAttributeQuery(AttributeQuery) - Method in class net.cnri.repository.search.AbstractQueryVisitorForSearch
visitAttributeQuery(AttributeQuery) - Method in interface net.cnri.repository.search.QueryVisitor
visitBooleanQuery(BooleanQuery) - Method in class net.cnri.repository.search.AbstractQueryVisitorForSearch
visitBooleanQuery(BooleanQuery) - Method in interface net.cnri.repository.search.QueryVisitor
visitElementAttributeQuery(ElementAttributeQuery) - Method in class net.cnri.repository.search.AbstractQueryVisitorForSearch
visitElementAttributeQuery(ElementAttributeQuery) - Method in interface net.cnri.repository.search.QueryVisitor
visitMatchAllObjectsQuery(MatchAllObjectsQuery) - Method in class net.cnri.repository.search.AbstractQueryVisitorForSearch
visitMatchAllObjectsQuery(MatchAllObjectsQuery) - Method in interface net.cnri.repository.search.QueryVisitor
visitRawQuery(RawQuery) - Method in class net.cnri.repository.search.AbstractQueryVisitorForSearch
visitRawQuery(RawQuery) - Method in interface net.cnri.repository.search.QueryVisitor

W

wasCanceled() - Method in class net.cnri.apps.doutilgui.AuthWindow
WEEKLY - Static variable in class net.cnri.apps.doserver.Main
who - Variable in class net.cnri.apps.dogui.view.DOPermissionEditor.DORule
write(byte[], int, int) - Method in class net.cnri.apps.doserver.LoggerOutputStream
write(byte[]) - Method in class net.cnri.apps.doserver.LoggerOutputStream
write(int) - Method in class net.cnri.apps.doserver.LoggerOutputStream
write(InputStream) - Method in class net.cnri.do_api.DataElement
write(InputStream, boolean) - Method in class net.cnri.do_api.DataElement: Writes the bytes from the given InputStream to the data element, returning the total number of bytes written.
write(InputStream) - Method in class net.cnri.repository.AbstractDataElement
write(String, String, InputStream, boolean) - Method in class net.cnri.repository.AbstractDirectRepository
write(InputStream, boolean) - Method in class net.cnri.repository.AbstractFileDataElement
write(InputStream) - Method in class net.cnri.repository.android.EmbeddedDataElement
write(InputStream, boolean) - Method in class net.cnri.repository.android.EmbeddedDataElement
write(String, String, InputStream, boolean) - Method in class net.cnri.repository.android.sqlite.SQLiteRepository
write(String, String, InputStream, boolean) - Method in class net.cnri.repository.bdbje.BdbjeRepository
write(InputStream) - Method in interface net.cnri.repository.DataElement: Writes new data into the data element.
write(InputStream, boolean) - Method in interface net.cnri.repository.DataElement: Writes new data into the data element.
write(String, String, InputStream, boolean) - Method in interface net.cnri.repository.DirectRepository: Writes new data into the data element.
write(InputStream, boolean) - Method in class net.cnri.repository.layered.LayeredDataElement
write(String, String, InputStream, boolean) - Method in class net.cnri.repository.layered.LayeredRepository
write(InputStream, boolean) - Method in class net.cnri.repository.memory.MemoryDataElement
write(InputStream, boolean) - Method in class net.cnri.repository.networked.NetworkedDataElement
write(InputStream, boolean) - Method in class net.cnri.repository.networked.NetworkedSearchResultDataElement
write(InputStream, boolean) - Method in class net.cnri.repository.rest.RestDataElement
write(InputStream) - Method in class net.cnri.repository.syncing.SyncingDataElement
write(InputStream, boolean) - Method in class net.cnri.repository.syncing.SyncingDataElement
write(String, String, InputStream, boolean) - Method in class net.cnri.repository.syncing.SyncingRepository
write(InputStream) - Method in class net.cnri.repository.wrapper.DataElementWrapper
write(InputStream, boolean) - Method in class net.cnri.repository.wrapper.DataElementWrapper
write(String, String, InputStream, boolean) - Method in class net.cnri.repository.wrapper.DirectRepositoryWrapper
writeConsoleContents(Writer) - Method in class net.cnri.apps.dogui.view.ConsolePanel
writeEmptyAttributesFile(File, String) - Static method in class net.cnri.repository.filesystem.FilesystemDigitalObject
writeEncryptedElement(DataElement, SecretKey, InputStream) - Method in class net.cnri.do_api.DOKeyRing: Encrypts and writes the data from the given source to the DataElement using the secret key to encrypt the data while recording the key identifier in the data element's attributes.
writeEscapedTxt(OutputStream, String) - Static method in class net.cnri.dobj.HeaderSet
writeHeaders(OutputStream) - Method in class net.cnri.dobj.HeaderSet
writeJSONStream(OutputStream, List<DigitalObject>) - Static method in class net.cnri.repository.util.RepositoryJSONSerializer
writeJSONStream(OutputStream, List<DigitalObject>) - Static method in class net.cnri.repository.util.RepositoryJsonSerializerV2
writeObjectToFile(DigitalObject, File) - Static method in class net.cnri.repository.util.BsonUtil
writePermissions(OutputStream) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor
writeQueryToParcel(Query, Parcel) - Static method in class net.cnri.repository.android.ParcelableQuery
writeQueryToString(Query) - Static method in class net.cnri.repository.android.ParcelableQuery
writeRule(OutputStream) - Method in class net.cnri.apps.dogui.view.DOPermissionEditor.PermissionComponent
writeToParcel(Parcel, int) - Method in class net.cnri.repository.android.ParcelableQuery

X

XML - Static variable in class net.cnri.apps.doserver.BuilderServlet
XML - Static variable in class net.cnri.apps.doserver.HashServlet
XML - Static variable in class net.cnri.apps.doserver.HTTPConnectionHandler
XML - Static variable in class net.cnri.apps.doserver.RESTServlet

A B C D E F G H I J K L M N O P Q R S T U V W X